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Author SHA1 Message Date
Ricardo Wurmus
ae463b48e7
gnu: python-aiohttp: Update to 3.11.11. 
* gnu/packages/python-web.scm (python-aiohttp): Update to 3.11.11.
[source]: Adjust snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags instead of modifying test in build phases;
remove custom 'check phase.
[propagated-inputs]: Add python-aiohappyeyeballs and python-propcache; remove
python-asynctest, python-charset-normalizer, and python-idna-ssl.
[native-inputs]: Remove python-async-generator; replace python-cython with
python-cython-3; add python-pytest-cov, python-setuptools, and python-wheel.

Change-Id: I5a95d3d801343b0afb824a8779be1f5f8e5d6eb8
 2025-01-16 10:17:19 +01:00
Ricardo Wurmus
b066de91e5
gnu: Add python-aiohappyeyeballs. 
* gnu/packages/python-web.scm (python-aiohappyeyeballs): New variable.

Change-Id: Ic453f1c6e67f181abf9d32ee3a92e05141515473
 2025-01-16 10:17:19 +01:00
Ricardo Wurmus
9a328c4233
gnu: python-yarl: Update to 1.18.3. 
* gnu/packages/python-web.scm (python-yarl): Update to 1.18.3.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; delete custom 'check phase; remove phase
'cythonize-code; add phase 'patch-build-system.
[native-inputs]: Remove python-cython and python-pytest-runner; add
python-covdefaults, python-cython-3, python-expandvars, python-pytest-cov,
python-pytest-xdist, python-setuptools, python-tomli, and python-wheel.
[propagated-inputs]: Add python-packaging and python-propcache.

Change-Id: Iab46d2600782ffee6fdf0c9816b771c0884af04a
 2025-01-16 10:17:19 +01:00
Ricardo Wurmus
5f7d457376
gnu: Add python-propcache. 
* gnu/packages/python-xyz.scm (python-propcache): New variable.

Change-Id: Id02eb09da7adbdc965065a3473d9567edafbf6a7
 2025-01-16 10:17:19 +01:00
Ricardo Wurmus
93a43710ab
gnu: Add python-expandvars. 
* gnu/packages/python-xyz.scm (python-expandvars): New variable.

Change-Id: I2782f1bb09321944ddfe8f3957d8036c2988fabc
 2025-01-16 10:17:19 +01:00
Ricardo Wurmus
af23aeb024
gnu: python-matrix-nio: Use test-flags. 
* gnu/packages/matrix.scm (python-matrix-nio)[arguments]: Remove custom 'check
phase; disable some tests using #:test-flags.

Change-Id: Ib7c826b1746c418f8c917581695a63a486c4acd7
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
1e270068aa
gnu: python-scikit-opt: Add missing input. 
* gnu/packages/python-science.scm (python-scikit-opt)[native-inputs]: Add
python-setuptools.

Change-Id: Id14e3964257e250c1ba597c6d8fe1a0410fa475f
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
0e32b5d8de
gnu: python-tables: Fix reference to library. 
* gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase
'fix-reference-to-blosc2.

Change-Id: If1e5f9ccf8e6e6c37f9c6521a98b208e0fc1fd01
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
909b6c86d6
gnu: python-openapi-spec-validator: Restore sanity check. 
* gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]:
Restore 'sanity-check phase.

Change-Id: I3fc22ef74a55a43f4ec2b32caeb630bc01d815d9
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
35bebdce71
gnu: python-openapi-core: Update to 0.19.4. 
* gnu/packages/python-web.scm (python-openapi-core): Update to 0.19.4.
[arguments]: Disable only one test.
[native-inputs]: Remove python-pypa-build.

Change-Id: I0660bcd129fb182dd7559c04fc65513ff846eedc
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
ee60ed4892
gnu: python-openapi-schema-validator: Relax requirements. 
* gnu/packages/python-web.scm (python-openapi-schema-validator)[arguments]:
Add phase 'relax-requirements.

Change-Id: I57dcc2030bca914af730922f9c511fab286f9d7d
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
7a5003a8b9
gnu: python-falcon: Update to 4.0.2. 
* gnu/packages/python-web.scm (python-falcon): Update to 4.0.2.
[source]: Remove snippet.
[arguments]: Disable slow tests; rename 'set-HOME to 'pre-check.
[native-inputs]: Replace python-cython with python-cython-3.

Change-Id: I10d3b412b8abc3bfb2271adba7fb1597fdb24098
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
f23af0eb91
gnu: python-testtools: Update to 2.7.2. 
* gnu/packages/check.scm (python-testtools-bootstrap):
Update to 2.7.2.
[propagated-inputs]: Drop labels.
[native-inputs]: Add python-hatchling, python-hatch-vcs, and
python-setuptools.
[build-system]: Use pyproject-build-system.
(python-testtools): Update to 2.7.2.
[arguments]: Disable some tests.
[native-inputs]: Add python-hatch-vcs, python-hatchling, python-twisted, and
python-setuptools.

Change-Id: I7c065b490229ecf4c11257c709b439521ef14222
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
abf1025c09
gnu: python-ipydatawidgets: Disable more tests and add inputs. 
* gnu/packages/jupyter.scm (python-ipydatawidgets)[arguments]: Disable widget
tests.
[propagated-inputs]: Add python-ipython-genutils; remove python-six.

Change-Id: I4e56f11d78880f1d99f59de3d53900f7aefb14ed
 2025-01-16 10:17:18 +01:00
Ricardo Wurmus
0df58994ce
gnu: python-dnspython: Disable ECDSA tests. 
* gnu/packages/python-xyz.scm (python-dnspython)[arguments]: Disable four
tests.

Change-Id: Ia8dad056dca0842cd709180c0819d595b171b18b
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
95b592644a
gnu: python-trio-typing: Update to 0.10.0. 
* gnu/packages/python-xyz.scm (python-trio-typing): Update to 0.10.0.
[native-inputs]: Remove python-attrs.
[propagated-inputs]: Remove python-mypy; add python-async-generator,
python-importlib-metadata, and python-packaging.

Change-Id: Ie8171ed0bdacb15f083c1c430162a8b4f28965f9
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
d653f0324f
gnu: python-trio: Update to 0.28.0. 
* gnu/packages/python-xyz.scm (python-trio): Update to 0.28.0.
[arguments]: Add phase 'ignore-deprecations.
[native-inputs]: Remove python-astor, python-jedi, python-isort, and
python-pytest-asyncio.
[propagated-inputs]: Remove python-async-generator.

Change-Id: I435fe322324bc5e58130d072db7f032c3a67c67e
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
79a7f53dfe
gnu: python-pyopenssl: Update to 24.3.0. 
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 24.3.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-wheel.

Change-Id: I504a80c300a94698771734734bed29c07cb13bd5
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
799fd8c06c
gnu: python-cryptography: Update to 44.0.0. 
* gnu/packages/python-crypto.scm (python-cryptography): Update to 44.0.0.
[arguments]<cargo-inputs>: Replace rust-asn1-0.16 with rust-asn1-0.20; replace
rust-pyo3-0.22 with rust-pyo3-0.23.
[source]: Remove obsolete part of snippet.
[native-inputs]: Remove python-iso8601 and python-pytest-subtests; add
python-cffi, python-click, python-mypy, python-pytest-cov,
python-pytest-randomly, and python-pytest-xdist.

Change-Id: I44dab9afec879d45d4612cb15e582ce1a62635ad
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
b12a01fa1b
gnu: python-cryptography-vectors: Update to 44.0.0. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors): Update to
44.0.0.
[native-inputs]: Remove python-setuptools and python-wheel.

Change-Id: I9d73e0ee5ef9af14c5a7ce5900d0814fea707f87
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
32c3eb8b5b
gnu: python-traittypes: Fix tests. 
* gnu/packages/python-science.scm (python-traittypes)[arguments]: Add phase
'numpy-compatibility.

Change-Id: I41d55d65d0dafd44029de38b3044d9fad378db50
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
74e9204087
gnu: cwltool: Patch tox.ini. 
* gnu/packages/bioinformatics.scm (cwltool)[arguments]: Rename 'modify-tests
to 'patch-tests; add patch of tox.ini.

Change-Id: I2c90a8803e7eb1153cb4c7cc5b683875627c57f1
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
ae0efdd3ec
gnu: cwltool: Use test-flags. 
* gnu/packages/bioinformatics.scm (cwltool)[arguments]: Use #:test-flags
instead of deleting and patching tests in 'modify-tests phase.

Change-Id: I0e4f16d48fba23e4197b69bf1c3923828f178cd0
 2025-01-16 10:17:17 +01:00
Ricardo Wurmus
3754a57e01
gnu: python-prov: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-prov): Update to 2.0.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove 'fix-rdflib-6-compatibility phase; add custom 'check
phase.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ia5e0ed1ee6e9476f317b345234018f2391cc3e98
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
e3a9919e4f
gnu: python-rdflib-6: Accept newer isodate. 
* gnu/packages/rdf.scm (python-rdflib-6)[arguments]: Add phase 'compatibility.

Change-Id: I4b4c880b169c6606707c1e973af9488c07d18992
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
c076d72fcf
gnu: python-rdflib-6: Disable one test. 
* gnu/packages/rdf.scm (python-rdflib-6)[arguments]: Disable one additional
test.

Change-Id: Ifcfe1b11d09299e219499ea77f792ca41aa02d9c
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
ff0b9ec427
gnu: python-cwl-utils: Add missing inputs. 
* gnu/packages/bioinformatics.scm (python-cwl-utils)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I803a68c04923c96f793d508c23bb08069524bc63
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
1a01ad95f3
gnu: python-cwl-upgrader: Add missing inputs. 
* gnu/packages/bioinformatics.scm (python-cwl-upgrader)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I81531d588e6deb8a01c59f2a824b815e8f95e0f0
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
b53830ad04
gnu: python-schema-salad: Update to 8.8.20241206093842. 
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.8.20241206093842.
[arguments]: Patch tox.ini.
[propagated-inputs]: Remove python-importlib-resources, python-setuptools, and
python-typing-extensions.
[native-inputs]: Add python-cachecontrol, python-mypy, python-setuptools,
python-setuptools-scm, python-types-dataclasses, python-types-requests, and
python-types-setuptools.

Change-Id: I22ca7ad772078192117a1139adca410b53844008
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
a3124804d6
gnu: python-isodate: Update to 0.7.2. 
* gnu/packages/time.scm (python-isodate): Update to 0.7.2.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-six; add python-pytest, python-setuptools,
python-setuptools-scm, and python-wheel.

Change-Id: I5ba64eb433e39c0bbb0360273f822d95ea7c63d3
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
f50085a0c7
gnu: python-cachecontrol: Update to 0.14.1. 
* gnu/packages/python-web.scm (python-cachecontrol): Update to 0.14.1.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-filelock.
[native-inputs]: Add python-flit-core.

Change-Id: I61bc38aafe04cf7f11394a654cf28181d39ce355
 2025-01-16 10:17:16 +01:00
Ricardo Wurmus
5d84345697
gnu: python-rdflib-6: Update to 6.3.2. 
* gnu/packages/rdf.scm (python-rdflib-6): Update to 6.3.2.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags instead of a custom build phase; update list of
disabled tests.
[native-inputs]: Add python-poetry-core and python-pytest-cov.

Change-Id: I0dd4ecebdf3ef04562c3a3efb37614bf5eec16f5
 2025-01-16 10:17:16 +01:00
Sergey Trofimov
bd8f26c24a
gnu: fava: Update to 1.27. 
* gnu/packages/finance.scm (fava): Update to 1.27.
[arguments] <phases>: Remove 'relax-requirements, and 'set-home.
[native-inputs]: Remove python-chardet, python-dateutil, and
python-setuptootls-scm. Add python-babel, python-mypy,
python-pytest-cov, python-setuptootls, python-twine,
python-types-setuptootls, python-types-simplejson, and python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iee27197ece9685c500afe0dedb8ba33e02eb1ea1
 2025-01-16 10:17:15 +01:00
Sergey Trofimov
9a6b6ab0a6
gnu: beancount: Fix build. 
* gnu/packages/finance.scm (beancount)
[native-inputs]: Add python-wheel and python-setuptools.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-16 10:17:15 +01:00
Sergey Trofimov
b9e517a6cd
gnu: Add python-types-simplejson. 
* gnu/packages/python-xyz.scm (python-types-simplejson): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-16 10:17:15 +01:00
Sergey Trofimov
b7f360074d
gnu: python-pdfminer-six: Update to 20240706. 
* gnu/packages/python-xyz.scm (python-pdfminer-six): Update to 20240706.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-16 10:17:15 +01:00
Sergey Trofimov
1f42f0f45e
gnu: python-markdown2: Update to 2.5.2. 
* gnu/packages/python-xyz.scm (python-markdown2)
[arguments] <phases>: Use default 'check.
[native-inputs]: Add python-pytest, python-setuptools and python-wheel.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic3df25863bbb37ec6282ec5dcbf815461663f8cd
 2025-01-16 10:17:15 +01:00
Sergey Trofimov
c9edda8f58
gnu: python-flask-babel: Update to 4.0.0. 
* gnu/packages/python-web.scm (python-flask-babel): Update to 4.0.0.
[source]: Fetch from git as PyPI release doesn't include tests.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-poetry-core, python-pytest,
python-pytest-cov, and python-pytest-mock.
[propagated-inputs]: Sort.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I253b88eac7bec8152dc97634059c2402624cb961
 2025-01-16 10:17:15 +01:00
Sergey Trofimov
1f6258f4d7
gnu: python-babel: Update to 2.16.0. 
* gnu/packages/python-xyz.scm (python-babel): Update to 2.16.0.
[source]: Adjust uri as it's changed in PyPI archive.
[build-system]: Swap to pyproject-build-system.
[arguments] <phases>: Use default 'check.
[native-inputs]: Add python-setuptools and python-wheel.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I32b7c5613e7db2c676745d6621f04b52a1cdf0ba
 2025-01-16 10:17:15 +01:00
Ricardo Wurmus
4d28655efe
gnu: pyscenic: Update to 0.12.1-1.eaf23eb. 
* gnu/packages/bioinformatics.scm (pyscenic): Update to 0.12.1-1.eaf23eb.
[arguments]: Update phase 'do-not-reference-deleted-modules.
[propagated-inputs]: Add python-numexpr.
[native-inputs]: Add python-wheel.

Change-Id: Ib1b5a7d36a24b280160befe579057a241d69455d
 2025-01-16 10:17:15 +01:00
Ricardo Wurmus
30da905347
gnu: python-pydantic-2: Update to 2.7.0. 
* gnu/packages/python-xyz.scm (python-pydantic-2): Update to 2.7.0.
[arguments]: Update tests.
[native-inputs]: Add tzdata-for-tests and python-jsonschema; remove
python-faker.

Change-Id: I8c85598f7603c58108602c6d67aa27314dea285e
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
383d3edb3e
gnu: python-pydantic-core: Update to 2.18.1. 
* gnu/packages/python-xyz.scm (python-pydantic-core): Update to 2.18.1.
[arguments]: Replace rust-jiter-0.0.4 with rust-jiter-0.2, rust-strum-0.25
with rust-strum-0.26, rust-strum-macros-0.25 with rust-strum-macros-0.26, and
rust-speedate-0.13 with rust-speedate-0.14.
[native-inputs]: Add python-typing-extensions.

Change-Id: I8686509f43667484847a72972aa2dd88dbce9343
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
b3a42630d9
gnu: Add rust-jiter-0.2. 
* gnu/packages/crates-io.scm (rust-jiter-0.2): New variable.

Change-Id: I7488999f653e126e7179728d732fb0054f949bd9
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
c3c3e65fe7
gnu: python-annotated-types: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-annotated-types): Update to 0.7.0.

Change-Id: I610b144339841768b4ce861d5457cf4184f756a2
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
11d4a424fa
gnu: macs-3: Add missing input. 
* gnu/packages/bioinformatics.scm (macs-3)[native-inputs]: Add python-wheel.

Change-Id: I22b8d8e144434ae537af7c113f4719392933e90c
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
70dd31fa2f
gnu: python-pydevd: Avoid test failures due to greendns. 
* gnu/packages/python-xyz.scm (python-pydevd)[arguments]: Disable one stubborn
test; set EVENTLET_NO_GREENDNS.

Change-Id: I3cf5af6c99dbb18095277f353f46c60f68a62188
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
da7a17f97a
gnu: python-pydevd: Disable flaky tests. 
Setting IS_PYPY doesn't do anything and I only set it before due to a
misunderstanding.  Instead we should disable flaky tests.

* gnu/packages/python-xyz.scm (python-pydevd)[arguments]: Ignore tests marked
as "flaky"; do not set IS_PYPY variable in 'pre-check phase.

Change-Id: If28f3dfd533df9048aeee5ecd42984b40ea0a22a
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
848ede5ef7
gnu: python-httpretty: Enable tests. 
* gnu/packages/web.scm (python-httpretty)[arguments]: Enable most tests.
[native-inputs]: Add nss-certs-for-test, python-freezegun, python-httplib2,
and python-pyparsing.

Change-Id: I08d2c14a2e81559d41dc38f0eeb34c2d6c59125a
 2025-01-16 10:17:14 +01:00
Ricardo Wurmus
f4be4ca989
gnu: python-dulwich: Update to 0.21.7. 
* gnu/packages/python-xyz.scm (python-dulwich): Update to 0.21.7.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; fix tests after 'unpack phase, split off
'pre-check phase.
[native-inputs]: Replace git with git-minimal/pinned; add python-mypy,
python-paramiko, python-pytest, python-requests, python-setuptools, and
python-wheel; remove python-mock and python-gpg.

Change-Id: I642de3e7707d545672066c6e59c9bcc2b5926097
 2025-01-16 10:17:13 +01:00
Ricardo Wurmus
0c4b5df86f
gnu: python-geventhttpclient: Update to 2.3.3. 
* gnu/packages/python-web.scm (python-geventhttpclient): Update to 2.3.3.
[source]: Fetch from git repository; remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; remove all custom phases.
[native-inputs]: Add python-requests, python-setuptools, and python-wheel.
[propagated-inputs]: Remove python-six.

Change-Id: Ide97ffb7d656f58dd6693bd59ff82706bfea6caa
 2025-01-16 10:17:13 +01:00