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gnu: cwltool: Use test-flags.

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* gnu/packages/bioinformatics.scm (cwltool)[arguments]: Use #:test-flags
instead of deleting and patching tests in 'modify-tests phase.

Change-Id: I0e4f16d48fba23e4197b69bf1c3923828f178cd0
This commit is contained in:
Ricardo Wurmus 2024-12-27 22:24:41 +01:00
parent 3754a57e01
commit ae0efdd3ec
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GPG key ID: 197A5888235FACAC
1 changed files with 11 additions and 17 deletions
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gnu/packages/bioinformatics.scm
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@ -6195,6 +6195,17 @@ (define-public cwltool
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
;; These tests try to connect to the internet.
'(list "--ignore=tests/test_content_type.py"
"--ignore=tests/test_udocker.py"
"--ignore=tests/test_http_input.py"
"-k"
(string-append
"not test_env_filtering"
" and not test_load_graph_fragment_from_packed"
;; Tries to use cwl-runners.
" and not test_v1_0_arg_empty_prefix_separate_false"))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'loosen-version-restrictions
@ -6209,23 +6220,6 @@ (define-public cwltool
(string-append "version=\"" #$version "\"")))))
(add-after 'unpack 'modify-tests
(lambda _
;; Tries to connect to the internet.
(delete-file "tests/test_content_type.py")
(delete-file "tests/test_udocker.py")
(delete-file "tests/test_http_input.py")
(substitute* "tests/test_load_tool.py"
(("def test_load_graph_fragment_from_packed")
(string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n"
"def test_load_graph_fragment_from_packed")))
(substitute* "tests/test_examples.py"
(("def test_env_filtering")
(string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n"
"def test_env_filtering")))
;; Tries to use cwl-runners.
(substitute* "tests/test_examples.py"
(("def test_v1_0_arg_empty_prefix_separate_false")
(string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n"
"def test_v1_0_arg_empty_prefix_separate_false")))
(substitute* '("tests/subgraph/env-tool2.cwl"
"tests/subgraph/env-tool2_req.cwl"
"tests/subgraph/env-wf2_subwf-packed.cwl"