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Author SHA1 Message Date
Ricardo Wurmus
e0f22b9470
gnu: r-phyloseq: Add missing input. 
* gnu/packages/bioconductor.scm (r-phyloseq)[native-inputs]: Add r-genefilter.

Change-Id: Iadc35d4721a69f37ba1370cc57e9320137c77738
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
5822e04f0c
gnu: r-bigpint: Disable tests. 
* gnu/packages/bioconductor.scm (r-bigpint)[arguments]: Disable tests.
[native-inputs]: Add r-runit.

Change-Id: I755558ce65d00451586e35b2111bfd3de3890674
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
2109b5e81c
gnu: Add r-rtcga-rnaseq. 
* gnu/packages/bioconductor.scm (r-rtcga-rnaseq): New variable.

Change-Id: I6e9287fe55da3f6db678603f115d790d273dacc2
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
49c0075061
gnu: r-rtcga: Disable tests. 
* gnu/packages/bioconductor.scm (r-rtcga)[arguments]: Disable tests.

Change-Id: If33bac14355a89a1a75860d3f28216a0614a64b1
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
d20395cc50
gnu: r-biovizbase: Add missing input. 
* gnu/packages/bioconductor.scm (r-biovizbase)[native-inputs]: Add
r-ensdb-hsapiens-v75.

Change-Id: I47b3e912af8af52f2168a111032662674327f86b
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
47a77af687
gnu: r-mediation: Skip vignettes. 
* gnu/packages/cran.scm (r-mediation)[arguments]: Disable vignettes.

Change-Id: I7172f3822a57069ce14c1e3589056300d6497ce2
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
7276dc8e87
gnu: r-rms: Skip tests. 
* gnu/packages/cran.scm (r-rms)[arguments]: Disable tests.
[native-inputs]: Add r-vgam.

Change-Id: Ia475863fc21cd4c8fdbcfc4f4a58eda3c086c99b
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
0f3733bc91
gnu: r-rliger: Add test inputs. 
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase 'delete-bad-tests.
[native-inputs]: Add r-testthat.

Change-Id: I65efd90de0478532f5b322ce71c04bdc7461a84d
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
92171d189d
gnu: r-rliger: Add manifest file to JAR. 
* gnu/packages/cran.scm (r-rliger)[arguments]: Generate MANIFEST.MF and
include it.

Change-Id: I676ff34d8f519a05995bd061ad77c7c6e1d90b39
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
71ddbc4784
gnu: r-pastecs: Add test input. 
* gnu/packages/cran.scm (r-pastecs)[native-inputs]: Add r-svunit.

Change-Id: I8848a0c80b35e1fe8a37d9cc0f5aa33a09e21c99
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
db7255f220
gnu: Add r-svunit. 
* gnu/packages/cran.scm (r-svunit): New variable.

Change-Id: I682f9068d242887d807086968f79f4b3828fba85
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
deb4667e67
gnu: r-triform: Add test input. 
* gnu/packages/bioconductor.scm (r-triform)[native-inputs]: Add r-runit.
[arguments]: Skip building vignettes.

Change-Id: If9d7cddb5c24d9f82a653df7ca664b4d75059742
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
f3ff1c4e44
gnu: r-gdsfmt: Add missing inputs. 
* gnu/packages/bioconductor.scm (r-gdsfmt)[native-inputs]: Add
r-biocgenerics, r-digest, and r-matrix.

Change-Id: Ia0f08199a49f4b9c3b5ecf751fa8ec211140b12f
 2024-12-03 10:54:07 +01:00
Ricardo Wurmus
29c7ded829
gnu: r-aroma-light: Add test input. 
* gnu/packages/bioconductor.scm (r-aroma-light)[native-inputs]: Add
r-princurve.

Change-Id: I073ba49e5b564d1b6202a25e119b3d67f103c757
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
bb6d215f68
gnu: r-matrixtests: Add test inputs. 
* gnu/packages/cran.scm (r-matrixtests)[native-inputs]: Add r-car, r-cosinor,
r-cosinor2, r-moments, r-nortest, and r-pmcmrplus.

Change-Id: I76a31fc34fa8cdaadfb56939f5d1a4de63c43262
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
d1ecc4aaa9
gnu: Add r-cosinor2. 
* gnu/packages/cran.scm (r-cosinor2): New variable.

Change-Id: I4434c614c7e5fdcb33f97d9cb6100bd1bb962172
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
d5725fc02a
gnu: Add r-cosinor. 
* gnu/packages/cran.scm (r-cosinor): New variable.

Change-Id: Iaecb697c68c51bfb0e1c9b184dee8bfb50c9ac33
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
2a7fcb45c6
gnu: r-anndatar: Add test inputs. 
* gnu/packages/bioinformatics.scm (r-anndatar)[native-inputs]: Add r-rhdf5,
r-seuratobject, r-singlecellexperiment, and r-testthat.

Change-Id: I233a1f7216241b5d9d8301e07acdf811edb24a28
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
29b5471658
gnu: r-pander: Add missing inputs. 
* gnu/packages/cran.scm (r-pander)[native-inputs]: Add
pandoc, r-lattice, and r-testthat.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: Ib1c27b0883a153bc92334f2ad3928380f470d95a
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
f0b3b617fe
gnu: r-acde: Disable tests. 
* gnu/packages/bioconductor.scm (r-acde)[arguments]: Disable tests.
[native-inputs]: Add r-biocgenerics.

Change-Id: I801951e942c80843bbdd6bc2eb63a31ddaf365a2
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
fc5a991847
gnu: r-chemmineob: Skip tests. 
* gnu/packages/bioconductor.scm (r-chemmineob)[arguments]: Only build
vignettes.

Change-Id: I8dae82ac4226c33a18009131b7e17662af84589b
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
d9e4a816aa
gnu: r-chemminer: Add missing inputs. 
* gnu/packages/bioconductor.scm (r-chemminer)[native-inputs]: Add
r-chemmineob, r-rsqlite, r-runit, and r-snow.

Change-Id: I625ae09918c3bdf9b7248e61c6d4959f67175f45
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
8de6c4af60
gnu: r-rcppml/devel: Add missing input. 
* gnu/packages/machine-learning.scm (r-rcppml/devel)[native-inputs]: Add
r-testthat.

Change-Id: I6a5c29c82d2417d53684dbb278ce4b1703988ffa
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
9f6ff92e78
gnu: r-rsvg: Add missing input. 
* gnu/packages/cran.scm (r-rsvg)[native-inputs]: Add r-spelling.

Change-Id: Ie31fbf1a745acca112bda7e8432c02c3e9141c9f
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
9496e53b3c
gnu: r-codedepends: Add missing input. 
* gnu/packages/bioconductor.scm (r-codedepends)[native-inputs]: Add
r-rgraphviz.

Change-Id: I1d122d4ac01b003ea6de5fb1df99399839fcea4d
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
543aac960b
gnu: r-rgdal: Add missing input. 
* gnu/packages/cran.scm (r-rgdal)[native-inputs]: Add r-sf.

Change-Id: I5ec21fbab319aa71b32a3adc2fd6484bc0a3becf
 2024-12-03 10:54:06 +01:00
Ricardo Wurmus
d7a1387ac3
gnu: r-spacetime: Do not build vignettes. 
* gnu/packages/cran.scm (r-spacetime)[arguments]: Skip vignettes.

Change-Id: I6ea95012e88ef868b516524dea32d6b1c2248a46
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
56da2440b6
gnu: r-rgeos: Add missing inputs. 
* gnu/packages/cran.scm (r-rgeos)[native-inputs]: Add r-testthat and r-xml.

Change-Id: I34ad60f5f342aadd8494ba436e31c3fbf1a873b5
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
c9b7f768d4
gnu: r-geneoverlap: Add missing inputs. 
* gnu/packages/bioconductor.scm (r-geneoverlap)[native-inputs]: Add
r-biocgenerics and r-biocstyle.

Change-Id: I538015455338a1ae8991e3b3a63bc2a951ad1d36
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
9f55a0fd9c
gnu: r-rgraphviz: Add missing input. 
* gnu/packages/bioconductor.scm (r-rgraphviz)[native-inputs]: Add r-xml.
[arguments]: Remove trailing #T.

Change-Id: I08df02db7f4a9d224cee5516c5bb15c836e79f7b
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
90622a0df1
gnu: r-spatstat-core: Add missing input. 
* gnu/packages/cran.scm (r-spatstat-core)[native-inputs]: Add
r-spatstat-model.

Change-Id: If8129db5645af1a6c97bb0505e2220198b573579
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
9552977498
gnu: r-genetclassifier: Add missing input. 
* gnu/packages/bioconductor.scm (r-genetclassifier)[native-inputs]: Add
r-leukemiaseset.

Change-Id: Ic2d2915acb5964b83212a6124b6e596b4f13c006
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
9283f30bae
gnu: Add r-leukemiaseset. 
* gnu/packages/bioconductor.scm (r-leukemiaseset): New variable.

Change-Id: Ida95165c48e074dbf841ec2c43ad3fb7da025fa3
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
26823f682e
gnu: r-rcppde: Add test input. 
* gnu/packages/cran.scm (r-rcppde)[native-inputs]: Add r-lattice.

Change-Id: Ibc945e3de2e055ed57e5451d9de5f08fe04679b3
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
5994d591f7
gnu: r-aims: Add test inputs. 
* gnu/packages/bioconductor.scm (r-aims)[native-inputs]: Add
r-breastcancervdx and r-hgu133a-db.

Change-Id: I980638a323893d1c4d00cfa2b23b3f5367aad9a5
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
b0bd97535c
gnu: Add r-hgu133a-db. 
* gnu/packages/bioconductor.scm (r-hgu133a-db): New variable.

Change-Id: I200ec7534c32e701ecc3117e04c5a10ea9a9ebf8
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
812fe49aa5
gnu: r-diversitree: Disable tests. 
* gnu/packages/cran.scm (r-diversitree)[arguments]: Only build vignettes.
[native-inputs]: Add r-caper, r-expm, r-lubridate, r-minqa, and r-testthat.

Change-Id: I39a584112cddbfee2b4429c4d3a070f5d6c3a2cc
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
0ecbfb6219
gnu: Remove r-xmisc. 
This package has been broken for a while and has been archived on CRAN due to
build errors and inactivity.

* gnu/packages/cran.scm (r-xmisc): Remove variable.

Change-Id: I0e558c13ba6c6694a1d9163c1a42bb4108c3dd33
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
37d0ed2627
gnu: r-performanceanalytics: Add test inputs. 
* gnu/packages/cran.scm (r-performanceanalytics)[native-inputs]: Add r-hmisc
and r-r-rsp.
[arguments]: Add phase 'set-HOME.

Change-Id: Ie8924d4d15fc45071144ae97e6bded22cefdc209
 2024-12-03 10:54:05 +01:00
Ricardo Wurmus
c7bb43e861
gnu: r-h5: Add test inputs. 
* gnu/packages/cran.scm (r-h5)[native-inputs]: Add r-knitr and r-testthat.

Change-Id: I04ebf7186f1646d537cda9fe0a971db2b2ffbc5b
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
2e8b8f034b
gnu: r-hmisc: Disable tests. 
* gnu/packages/statistics.scm (r-hmisc)[arguments]: Only build vignettes.
[native-inputs]: Add r-mvtnorm.

Change-Id: I1ae7536e6256ddb145a8b2de05e2140dfe0054ea
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
5c4aaf2298
gnu: r-pbdmpi: Disable tests. 
* gnu/packages/cran.scm (r-pbdmpi)[arguments]: Only build vignettes.

Change-Id: I7aa190e24fd4172605c773c0508654c42ff0e1fc
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
84f6b3a17d
gnu: r-grimport: Add test input. 
* gnu/packages/cran.scm (r-grimport)[native-inputs]: Add r-lattice.
[arguments]: Skip building vignettes.

Change-Id: If79ccf922de1e4d87c6853bb3dc5db4a82fa2b9a
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
2c05e2d200
gnu: r-maxstat: Add test input. 
* gnu/packages/cran.scm (r-maxstat)[native-inputs]: Add r-survival.

Change-Id: Id9d3b2e61545917973b6744e7687f179df278455
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
46aa444273
gnu: r-grimport2: Add test input. 
* gnu/packages/cran.scm (r-grimport2)[native-inputs]: Add r-gridsvg.

Change-Id: I4fa1d4455b60b221a68a9fb70e905ddd753202a4
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
5233d191af
gnu: r-gridsvg: Add test inputs. 
* gnu/packages/cran.scm (r-gridsvg)[native-inputs]: Add r-lattice.

Change-Id: Icbe34211c7bd9c290d14281fc6e3a130d754d287
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
c6afb73a6a
gnu: r-dyn: Add test inputs. 
* gnu/packages/cran.scm (r-dyn)[native-inputs]: Add r-sandwich.

Change-Id: I9e05ba91418a4f9ae2cd4880c06fbeecd54a07c8
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
de7ebc90b6
gnu: Add r-caper. 
* gnu/packages/cran.scm (r-caper): New variable.

Change-Id: Ie9953748f3703784c6e89f93fe3cc39e11cafca5
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
8b619c0588
gnu: r-roptim: Add test inputs. 
* gnu/packages/cran.scm (r-roptim)[native-inputs]: Add r-r-rsp and r-testthat.
[arguments]: Add phase 'set-HOME.

Change-Id: Ib2dce8bfe4480e81855cc34baf1daa2765bd2259
 2024-12-03 10:54:04 +01:00
Ricardo Wurmus
49cea1ae7d
gnu: r-littler: Add missing input. 
* gnu/packages/cran.scm (r-littler)[inputs]: Add libdeflate.

Change-Id: I9c9488f298db8acbb50cb674c7efb7f752350c34
 2024-12-03 10:54:04 +01:00