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144763 commits

Author SHA1 Message Date
Ludovic Courtès
858dd7e721
etc: Add upgrade manifest.
* guix/scripts/build.scm (dependents): Export.
* etc/upgrade-manifest.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.

Change-Id: I1b2a2ebd09e559c68da9f25772bf33caacb4c031
2024-12-01 20:14:16 +01:00
Ludovic Courtès
3dfb757a45
transformations: Add #:authenticate? to ‘package-with-upstream-version’.
* guix/transformations.scm (upstream-source-without-signatures): New
procedures.
(package-with-upstream-version): Add #:authenticate? and honor it.

Change-Id: Ib86feb765f57bc1b129e813780abc605c43ed97b
2024-12-01 20:14:16 +01:00
Ludovic Courtès
dbce5c2d47
transformations: ‘package-with-upstream-version’ can preserve patches.
* guix/transformations.scm (upstream-fetch): New procedure.
(package-with-upstream-version): Add #:preserve-patches? and honor it.

Change-Id: Ib56b84957d8bdad2eebe2551e2a6e477506fc55e
2024-12-01 20:14:16 +01:00
Ludovic Courtès
c6050cce28
guix build: Validate that the file passed to ‘-m’ returns a manifest.
* guix/scripts/build.scm (options->things-to-build)[ensure-manifest]:
New procedure.
Use it.

Change-Id: If64c483d7079f441a296d5bd4e06e67f44cbb7bf
2024-12-01 20:14:16 +01:00
Ludovic Courtès
5d6691d33e
gnu-maintenance: ‘generic-html’ update honors <base href="…">.
This fixes updates of ‘curl’: <https://curl.se/download/> includes
<base href="…"> in its head and ignoring it would lead to incorrect
download URLs.

* guix/gnu-maintenance.scm (html-links): Keep track of <base href="…">
in ‘loop’.  Rewrite relative links at the end.

Change-Id: I989da78df3431034c9a584f8e10cad87ae6dc920
2024-12-01 20:14:16 +01:00
Ludovic Courtès
db59509931
gnu: git-minimal: Add ‘upstream-name’ property.
* gnu/packages/version-control.scm (git-minimal)[properties]: Add
‘upstream-name’.

Change-Id: I2d2516003b7f686852a3531859d06ca7f4e4820d
2024-12-01 20:14:16 +01:00
Ludovic Courtès
79be44fb51
gnu: gnutls: Change release monitoring URL.
* gnu/packages/tls.scm (gnutls)[properties]: Change release monitoring
URL.  Add ‘upstream-name’.

Change-Id: If6ee941246b130914ddf7ca11c074a9547b9d739
2024-12-01 20:14:16 +01:00
Ludovic Courtès
2227a6b084
gnu: Update updater properties for GnuPG-related packages.
* gnu/packages/gnupg.scm (libgpg-error)[properties]: Remove.
(libgcrypt)[properties]: Remove.
(libassuan)[properties]: Remove.
(libksba)[properties]: Remove.
(npth)[properties]: Remove.
(gnupg)[properties]: Remove.
(gpgme)[properties]: Remove.
(pinentry-tty)[properties]: Change for ‘generic-html’.
(gpa)[properties]: Remove.

Change-Id: I1eb9d6ad5bb3ecbfbef3d44dbae281a3de7ebac7
2024-12-01 20:14:15 +01:00
Ludovic Courtès
e85cce3431
gnu-maintenance: ‘gnu-ftp’ updater excludes GnuPG-hosted packages.
Since ftp://ftp.gnupg.org no longer exists, another updater should be
used for packages with code fetched from mirror://gnupg.

* guix/gnu-maintenance.scm (gnupg-hosted?): New procedure.
(%gnu-ftp-updater): Exclude packages that match ‘gnupg-hosted?’.
* guix/download.scm (%mirrors): Remove ftp://ftp.gnupg.org.

Change-Id: I653877ad843da60281d3a234acc85743bee64856
2024-12-01 20:14:15 +01:00
Ludovic Courtès
da9c3195ed
import: gnome: Keep going upon HTTP errors.
* guix/import/gnome.scm (import-gnome-release): Do not re-raise
condition C, emit a warning instead.

Change-Id: I9a7c337a17d1f7ed4677398e7b0f383befca7d74
2024-12-01 20:14:15 +01:00
Ludovic Courtès
6b14eb3402
guix build: Add ‘--dependents’.
* guix/scripts/build.scm (show-help, %options): Add ‘--dependents’.
(dependents): New procedure.
(options->things-to-build): Add ‘store’ parameter; honor ‘dependents’
option.
[for-type]: Handle ‘dependents’ type.
(options->derivations): Update call to ‘options->things-to-build’.
* tests/guix-build.sh: Add test.
* doc/guix.texi (Additional Build Options): Document ‘--dependents’.
(Invoking guix refresh): Cross-reference it.
* doc/contributing.texi (Submitting Patches): Mention it.

Change-Id: I00b6d5831e1f1d35dc8b84a82605391d5a8f417c
2024-12-01 20:14:15 +01:00
Ludovic Courtès
4b5dae8def
packages: Factorize ‘all-packages’.
* gnu/packages.scm (all-packages): New procedure.
* etc/source-manifest.scm (all-packages): Remove.
* guix/scripts/graph.scm (all-packages): Remove.
* guix/scripts/refresh.scm (all-packages): Remove.
* guix/scripts/weather.scm (all-packages): Remove.

Change-Id: I6072952c4b877b541037ce86402cfb7744eeb0a0
2024-12-01 20:14:15 +01:00
Ludovic Courtès
a633422371
guix build: Add ‘--development’ option.
* guix/scripts/build.scm (show-help, %options): Add ‘-D’.
(options->things-to-build): Change ‘append-map’ to a loop.  Honor ‘-D’.
* tests/guix-build.sh: Add test.
* doc/guix.texi (Additional Build Options): Document it.

Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I99227aadfe861e43c001a4872292bd687b37f5d4
2024-12-01 20:14:15 +01:00
Ludovic Courtès
bc3c89a475
gnu-maintenance: Savannah/Xorg updaters no longer abort on network errors.
Previously these updaters would fail upon networking error, causing the
whole process to abort:

  $ guix refresh coreutils libgcrypt
  guix refresh: error: connect*: Connection refused

* guix/gnu-maintenance.scm (import-release*, import-xorg-release): Wrap
in ‘false-if-networking-error’.

Change-Id: I8d309bf8662e2d46460585b4a1b7da0a4f2e8907
2024-12-01 20:14:15 +01:00
Ludovic Courtès
2c5f6787fd
gnu-maintenance: ‘import-html-release’ doesn’t abort upon HTTP 404.
Previously, updaters using ‘import-html-release’ would throw to 'quit
when the HTML page isn’t found, aborting the whole process:

  $ guix refresh coreutils libchop
  guix refresh: error: https://de.freedif.org/savannah//libchop/: HTTP download failed: 404 ("Not Found")

* guix/gnu-maintenance.scm (url->links): Guard against ‘http-get-error?’
and return the empty list when it is raised.

Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I419ff96ddb424aa8c74d6bab3d66a5e85355c3dc
2024-12-01 20:14:14 +01:00
Ludovic Courtès
8ee03e30bd
transformations: Export ‘package-with-upstream-version’.
* guix/transformations.scm (package-with-upstream-version): Export.

Change-Id: I8e09e69e9c32bffc329c97ef1c0258f750181b11
2024-12-01 20:14:14 +01:00
Efraim Flashner
85743578bc
gnu: ucx: Enable building on riscv64-linux.
* gnu/packages/fabric-management.scm (ucx)[supported-systems]: Add
riscv64-linux.

Change-Id: I84d506c3ebfd8d4d237a6545ba125f4a037fa821
2024-12-01 19:58:10 +02:00
Efraim Flashner
d767459ba3
gnu: ucx: Fix building on powerpc64le-linux.
* gnu/packages/fabric-management.scm (ucx)[source]: Add snippet to add
missing include file.

Change-Id: I65a0d6e57a2728013030f3f344305744fa913390
2024-12-01 19:57:10 +02:00
Herman Rimm
2348283dab
bootloader: u-boot: Add procedure to share installer code.
* gnu/bootloader/u-boot.scm (make-u-boot-installer): Add procedure.
(install-u-boot-ts7970-q-2g-1000mhz-c-u-boot,
install-qemu-riscv64-u-boot): Remove variables.
(install-starfive-visionfive2-uEnv.txt,
u-boot-ts7970-q-2g-1000mhz-c-bootloader,
u-boot-qemu-riscv64-bootloader): Use make-u-boot-installer.

Change-Id: I0b0b507925a7c8ca608f7307d442d9588862ae91
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-01 17:56:00 +01:00
Herman Rimm
ca748392ce
bootloader: grub: Add procedure to share EFI installer code.
* gnu/bootloader/grub.scm (make-grub-efi-bootloader): Add procedure.
(install-grub-efi, install-grub-efi32): Remove variables.
(install-grub-efi-removable): Deprecate variable.

Change-Id: Ie10b506bb1088179d459ddafe3229fd730ac45aa
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-01 17:55:56 +01:00
Ludovic Courtès
15647355e5
gnu: openmpi@5: Update to 5.0.6.
* gnu/packages/mpi.scm (openmpi-5): Update to 5.0.6.

Change-Id: I1aed5f0e76d64a215c4a13f445628ec206e31acf
2024-12-01 17:48:20 +01:00
Ludovic Courtès
db1d75b9fd
gnu: rdma-core: Update to 54.0.
* gnu/packages/linux.scm (rdma-core): Update to 54.0.

Change-Id: I7f10ec57a1cad585abb08bdc30bd9e2aaafe7624
2024-12-01 17:48:15 +01:00
Ludovic Courtès
8ba6651d39
gnu: ucx: Update to 1.17.0.
* gnu/packages/fabric-management.scm (ucx): Update to 1.17.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Rebase.

Change-Id: I2089de93da88f4f81c4b233eb03abae1f41dfe7f
2024-12-01 17:48:11 +01:00
Ludovic Courtès
c25fd8eeb1
Revert "gnu: ucx: Update to 1.17.0."
This reverts commit 7c36577cde, which
broke unit tests running in the chroot build environment.

For instance, tests of ‘hdf5-parallel-openmpi’ would fail with:

  Testing ../../src/h5diff/ph5diff -c 1_vds.h5 2_vds.h5                 *FAILED*
  ====Expected result (expect_sorted) differs from actual result (actual_sorted)
      *** expect_sorted	2024-12-01 16:41:03.795879595 +0000
      --- actual_sorted	2024-12-01 16:41:03.791879542 +0000
      ***************
      *** 1,3 ****
      --- 1,15 ----
	Not comparable: </vds_dset> has rank 3, dimensions [5x18x8], max dimensions [18446744073709551615x18x8]
	Warning: </vds_dset> or </vds_dset> is a virtual dataset
      + [1733071262.437780] [localhost:33263:0]       tcp_iface.c:893  UCX  ERROR scandir(/sys/class/net) failed: No such file or directory
      + [1733071262.468994] [localhost:33247:0]       tcp_iface.c:893  UCX  ERROR scandir(/sys/class/net) failed: No such file or directory
      + [1733071262.479911] [localhost:33242:0]       tcp_iface.c:893  UCX  ERROR scandir(/sys/class/net) failed: No such file or directory

Change-Id: I9c08d3c5375a2abd7d78344dfbef9b407828d1e0
2024-12-01 17:46:43 +01:00
Jonathan Brielmaier
4f6e9c7de1
gnu: icedove: Update to 115.16.3.
* gnu/packages/gnuzilla.scm (icedove): Update to 115.16.3.

Change-Id: I076e670a5442a910ac6d5aeb7ed8f64236442062
2024-12-01 14:12:33 +01:00
Efraim Flashner
1bcf1a0146
gnu: openmpi-5: Don't force building with ucx.
* gnu/packages/mpi.scm (openmpi-5)[inputs]: Use inherited inputs to only
add ucx when it is supported.
[arguments]: Only add configure-flag for ucx when it is included as an
input.

Change-Id: I4a5fc86999ffbafdb99bd68c170fc7a1fa6a33a5
2024-12-01 14:55:08 +02:00
Efraim Flashner
7c36577cde
gnu: ucx: Update to 1.17.0.
* gnu/packages/mpi.scm (ucx): Update to 1.17.0.
[source]: Remove patch.  Add snippet to add missing header.
[supported-systems]: Add riscv64-linux.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: I56db18f32ec0baa8439a31a1781763f318e8726e
2024-12-01 14:55:08 +02:00
Efraim Flashner
0aae7c333d
gnu: libfabric: Check for transitive supported packages.
* gnu/packages/linux.scm (libfabric)[inputs]: Adjust if-supported
function to check the package-transitive-supported-systems.

Change-Id: I47d14b08906753d20f6f2a7ab4068a9e84319350
2024-12-01 14:55:08 +02:00
Efraim Flashner
2790f7b437
gnu: cassini-headers: Limit supported systems.
* gnu/packages/linux.scm (cassini-headers)[supported-systems]: New field.

Change-Id: I44efa95de527099774abb57da78410c627fdc968
2024-12-01 14:55:04 +02:00
Josep Bigorra
d08c219b4a
gnu: Add scenefx.
* gnu/packages/wm.scm (scenefx): New variable.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: Ia91747cbec59226a83a020b5fedbfd99886c35df
2024-12-01 19:04:50 +08:00
Lynn Leichtle
af13915b28
gnu: cataclysm-dda: Update to 0-H.
* gnu/packages/games.scm (cataclysm-dda): Update to 0.H.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: I8f3776b1bbb4ead2d409b2e1a3c4c98537126f12
2024-12-01 19:04:26 +08:00
Zheng Junjie
ff3c9fd5e3
gnu: plasma-nm: Add missing inputs.
* gnu/packages/kde-plasma.scm (plasma-nm)[inputs]: Add
mobile-broadband-provider-info.
[arguments]: Stop replace 'check phase.

Change-Id: I82b220694e26b48f190c1c5d6609da39e955cc30
2024-12-01 18:15:07 +08:00
Sergey Trofimov
e5c1a708f5
gnu: geoclue: Update to 2.7.2.
* gnu/packages/gnome.scm (geoclue): Update to 2.7.2.
* gnu/packages/patches/geoclue-config.patch: Adjust.

Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2024-12-01 10:55:53 +01:00
Liliana Marie Prikler
d1dd176af5
gnu: gimp-next: Update to 3.0.0-RC1.
* gnu/packages/gimp.scm (gimp-next): Update to 3.0.0-RC1.
[inputs]: Add python-pygobject.

Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-12-01 10:55:53 +01:00
Liliana Marie Prikler
70caf73108
gnu: gegl: Update to 0.4.50.
* gnu/packages/gimp.scm (gegl): Update to 0.4.50.

Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-12-01 10:55:53 +01:00
Liliana Marie Prikler
011dbaedb5
gnu: babl: Update to 0.1.110.
* gnu/packages/gimp.scm (babl): Update to 0.1.110.

Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-12-01 10:55:52 +01:00
Ricardo Wurmus
c5b16964bb
gnu: r-voltron: Add Python inputs.
* gnu/packages/bioinformatics.scm (r-voltron)[inputs]: Add python,
python-numpy, python-pandas, python-anndata, python-h5py, python-natsort,
python-numcodecs, python-packaging, python-scipy, python-tifffile, and
python-zarr.

Change-Id: Iab137936550b51d6839d9beaa47f6102a8f3c355
2024-12-01 10:41:35 +01:00
Ricardo Wurmus
c7e412e775
gnu: r-voltron: Update to 0.2.0-1.9f9415c.
* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.0-1.9f9415c.
[inputs]: Remove tbb.
[propagated-inputs]: Remove r-anndata, r-fastdummies, r-fnn, r-ggforce,
r-hdf5r, r-htmltools, r-interp, r-morpho, r-raster, r-s4vectors, r-scales,
r-terra, r-umap, and r-xml; add r-basilisk, r-ids, r-rann, r-rcdt,
r-rcppannoy, r-rcpparmadillo, r-reticulate, r-s4arrays, and r-sp.
[native-inputs]: Add r-testthat.
[description]: Update.

Change-Id: I8051ade560e03f8e3760560ec7b78d9941c00e08
2024-12-01 10:26:38 +01:00
Ricardo Wurmus
5531485c5d
gnu: Add r-rcdt.
* gnu/packages/cran.scm (r-rcdt): New variable.

Change-Id: I83b00c95f2c3c6f82e9e9cf8f173ba087e1c29e0
2024-12-01 10:26:38 +01:00
Ricardo Wurmus
f228b01738
gnu: Add r-colorsgen.
* gnu/packages/cran.scm (r-colorsgen): New variable.

Change-Id: I1acb2b0dd2661a5abdb59451522da6dffa85f470
2024-12-01 10:26:38 +01:00
Sharlatan Hellseher
5725688923
gnu: imppg: Disable tests on non x86_64 architectures.
Tests regretion after update to the latest version as seen in CI log
<https://ci.guix.gnu.org/build/6720267/log/raw>.

* gnu/packages/astronomy.scm (imppg) [arguments]<test-flags>: Silent
tests on non x86_64 architectures, report upstream as well.

Change-Id: I875350ac60dc2f6a72eb1216a614d8943d41f9ed
2024-12-01 08:58:22 +00:00
Zheng Junjie
f4831760a9
gnu: weechat: Switch to git source.
* gnu/packages/irc.scm (weechat)[source]: Use git-fetch.

Change-Id: I031d494db1b7c273bc87d0bdb21ee51c2c3ae10b
2024-12-01 16:03:57 +08:00
Zheng Junjie
f9c3a6dd2a
gnu: weechat: Improve style.
* gnu/packages/irc.scm (weechat)[native-inputs]: Remove label.
[arguments]: Use G-expressions.

Change-Id: I08e2f4135760e61acbae915f045fb3838d965b25
2024-12-01 16:03:57 +08:00
Ashish SHUKLA
0cd8edf926
gnu: weechat: Update to 4.4.4.
* gnu/packages/irc.scm (weechat): Update to 4.4.4.

Change-Id: I08c120df160c3ff7095f2418fe9f9553df3abe3c
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-12-01 16:03:57 +08:00
Zheng Junjie
db2b0d7df0
gnu: lftp: Use G-expressions.
* gnu/packages/ftp.scm (lftp)[arguments]: Use G-expressions.

Change-Id: I504465e7604d9638442b063753a8cf8abf3616a9
2024-12-01 16:03:57 +08:00
Ashish SHUKLA
f45aae2287
gnu: lftp: Update to 4.9.3.
The updated information is sourced from the upstream repository at
GitHub: https://github.com/lavv17/lftp

* gnu/packages/ftp.scm (lftp): Update to 4.9.3.
[source]<origin>: Switch to git upstream.
[native-inputs]: Add autoconf, automake, gettext-minimal, bison, gnulib,
gperf, and libtool.
[arguments]<#:phases>: Add unpack-gnulib phase. Delete existing bootstrap
phase. Add new bootstrap phase to invoke it after patch-source-shebangs.
[home-page]: Update it.

Change-Id: I73771ed7e577da4bc82a8e74550eca83413dc8de
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-12-01 16:03:57 +08:00
Nicolas Graves
2dc38e493b
gnu: b4: Fix git binary access.
* gnu/packages/version-control.scm (b4)[arguments]<#:phases>: Fix
phase 'hardcode-git-bin.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-12-01 16:03:57 +08:00
Zheng Junjie
db8a0b480a
gnu: wget2: Use G-expressions.
* gnu/packages/wget.scm (wget2): Use G-expressions.

Change-Id: I8fbb5bab0746c5c98d2513fb31936ba56a8b7049
2024-12-01 16:03:54 +08:00
Ricardo Wurmus
adfda4a075
gnu: pigx-scrnaseq: Update to 1.1.10.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.10.
[arguments]: Remove quasiquote.

Change-Id: I6cab358addfb376a878929bfb5041edc00cd336a
2024-12-01 08:52:51 +01:00
Ricardo Wurmus
b21b8e909d
gnu: pigx-bsseq: Update to 0.1.10.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.10.
[native-inputs]: Use tzdata-for-tests instead of tzdata.
[arguments]: Remove quasiquote.

Change-Id: I680b08cda788fc03a8bedb87f241116a051798d6
2024-12-01 08:52:51 +01:00