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gnu: r-voltron: Update to 0.2.0-1.9f9415c.
* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.0-1.9f9415c. [inputs]: Remove tbb. [propagated-inputs]: Remove r-anndata, r-fastdummies, r-fnn, r-ggforce, r-hdf5r, r-htmltools, r-interp, r-morpho, r-raster, r-s4vectors, r-scales, r-terra, r-umap, and r-xml; add r-basilisk, r-ids, r-rann, r-rcdt, r-rcppannoy, r-rcpparmadillo, r-reticulate, r-s4arrays, and r-sp. [native-inputs]: Add r-testthat. [description]: Update. Change-Id: I8051ade560e03f8e3760560ec7b78d9941c00e08
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@ -21747,70 +21747,59 @@ (define-public r-velocyto
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(license license:gpl3))))
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(define-public r-voltron
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(let ((commit "5057b703479239a9aaba761f07e65d849f6111f8")
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(let ((commit "9f9415c72e9347f578a166981842d33e43b0466d")
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(revision "1"))
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(package
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(name "r-voltron")
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(version (git-version "1.0.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/BIMSBbioinfo/VoltRon")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1nximl4708a7fdwn8ysxpni3mp6dx33cphavlay7hh1pa55pnzgn"))
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(modules '((guix build utils)))
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;; The tripack package is not available under a free license,
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;; but interp provides free implementations of "tri.mesh" and
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;; "neighbours".
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(snippet
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'(substitute* '("DESCRIPTION" "NAMESPACE" "R/spatial.R")
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(("tripack") "interp")))))
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(version (git-version "0.2.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/BIMSBbioinfo/VoltRon")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0bvvpj96ix2ij6034dfrh7za1lvf73qxqsdvbs2wrpc931s18q32"))))
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(properties `((upstream-name . "VoltRon")))
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(build-system r-build-system)
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(inputs (list opencv tbb zlib))
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(propagated-inputs (list r-anndata
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(inputs (list opencv zlib))
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(propagated-inputs (list r-basilisk
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r-data-table
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r-dplyr
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r-ebimage
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r-fastdummies
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r-fnn
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r-ggforce
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r-ggplot2
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r-ggpubr
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r-ggrepel
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r-hdf5r
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r-htmltools
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r-ids
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r-igraph
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r-interp
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r-irlba
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r-magick
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r-matrix
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r-morpho
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r-raster
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r-rann
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r-rcdt
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r-rcpp
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r-rcppannoy
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r-rcpparmadillo
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r-reshape2
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r-reticulate
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r-rjson
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r-rlang
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r-s4vectors
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r-scales
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r-s4arrays
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r-shiny
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r-shinyjs
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r-sp
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r-stringr
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r-terra
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r-umap
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r-xml))
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(native-inputs (list pkg-config))
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r-uwot))
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(native-inputs (list pkg-config r-testthat))
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(home-page "https://github.com/BIMSBbioinfo/VoltRon")
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(synopsis "VoltRon for Spatial Data Integration and Analysis")
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(synopsis "VoltRon for spatial data integration and analysis")
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(description
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"@code{VoltRon} is a toolbox for spatial data analysis, multi-omics
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integration using spatial image registration. @code{VoltRon} is capable of
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analyzing multiple types and modalities of spatially-aware datasets.
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@code{VoltRon} visualizes and analyzes regions of interests (ROIs), spots,
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cells and even molecules.")
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"@code{VoltRon} is a novel spatial omic analysis toolbox for
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multi-omics integration using spatial image registration. @code{VoltRon} is
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capable of analyzing multiple types and modalities of spatially-aware
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datasets. @code{VoltRon} visualizes and analyzes regions of interests (ROIs),
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spots, cells and even molecules.")
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(license license:expat))))
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(define-public methyldackel
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