gnu: r-voltron: Update to 0.2.0-1.9f9415c.

* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.0-1.9f9415c.
[inputs]: Remove tbb.
[propagated-inputs]: Remove r-anndata, r-fastdummies, r-fnn, r-ggforce,
r-hdf5r, r-htmltools, r-interp, r-morpho, r-raster, r-s4vectors, r-scales,
r-terra, r-umap, and r-xml; add r-basilisk, r-ids, r-rann, r-rcdt,
r-rcppannoy, r-rcpparmadillo, r-reticulate, r-s4arrays, and r-sp.
[native-inputs]: Add r-testthat.
[description]: Update.

Change-Id: I8051ade560e03f8e3760560ec7b78d9941c00e08
This commit is contained in:
Ricardo Wurmus 2024-12-01 10:22:16 +01:00
parent 5531485c5d
commit c7e412e775
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -21747,70 +21747,59 @@ (define-public r-velocyto
(license license:gpl3))))
(define-public r-voltron
(let ((commit "5057b703479239a9aaba761f07e65d849f6111f8")
(let ((commit "9f9415c72e9347f578a166981842d33e43b0466d")
(revision "1"))
(package
(name "r-voltron")
(version (git-version "1.0.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/BIMSBbioinfo/VoltRon")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1nximl4708a7fdwn8ysxpni3mp6dx33cphavlay7hh1pa55pnzgn"))
(modules '((guix build utils)))
;; The tripack package is not available under a free license,
;; but interp provides free implementations of "tri.mesh" and
;; "neighbours".
(snippet
'(substitute* '("DESCRIPTION" "NAMESPACE" "R/spatial.R")
(("tripack") "interp")))))
(version (git-version "0.2.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/BIMSBbioinfo/VoltRon")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0bvvpj96ix2ij6034dfrh7za1lvf73qxqsdvbs2wrpc931s18q32"))))
(properties `((upstream-name . "VoltRon")))
(build-system r-build-system)
(inputs (list opencv tbb zlib))
(propagated-inputs (list r-anndata
(inputs (list opencv zlib))
(propagated-inputs (list r-basilisk
r-data-table
r-dplyr
r-ebimage
r-fastdummies
r-fnn
r-ggforce
r-ggplot2
r-ggpubr
r-ggrepel
r-hdf5r
r-htmltools
r-ids
r-igraph
r-interp
r-irlba
r-magick
r-matrix
r-morpho
r-raster
r-rann
r-rcdt
r-rcpp
r-rcppannoy
r-rcpparmadillo
r-reshape2
r-reticulate
r-rjson
r-rlang
r-s4vectors
r-scales
r-s4arrays
r-shiny
r-shinyjs
r-sp
r-stringr
r-terra
r-umap
r-xml))
(native-inputs (list pkg-config))
r-uwot))
(native-inputs (list pkg-config r-testthat))
(home-page "https://github.com/BIMSBbioinfo/VoltRon")
(synopsis "VoltRon for Spatial Data Integration and Analysis")
(synopsis "VoltRon for spatial data integration and analysis")
(description
"@code{VoltRon} is a toolbox for spatial data analysis, multi-omics
integration using spatial image registration. @code{VoltRon} is capable of
analyzing multiple types and modalities of spatially-aware datasets.
@code{VoltRon} visualizes and analyzes regions of interests (ROIs), spots,
cells and even molecules.")
"@code{VoltRon} is a novel spatial omic analysis toolbox for
multi-omics integration using spatial image registration. @code{VoltRon} is
capable of analyzing multiple types and modalities of spatially-aware
datasets. @code{VoltRon} visualizes and analyzes regions of interests (ROIs),
spots, cells and even molecules.")
(license license:expat))))
(define-public methyldackel