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148123 commits

Author SHA1 Message Date
Ricardo Wurmus
537f9642eb
gnu: r-nnlm: Add missing input.
* gnu/packages/statistics.scm (r-nnlm)[native-inputs]: Add r-testthat.

Change-Id: Id0acc0730f43e87d764b2938a299e3a0734358d5
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
c6fb9d8a3f
gnu: r-arsenal: Add missing input.
* gnu/packages/cran.scm (r-arsenal)[native-inputs]: Add r-broom.

Change-Id: I442b99b481b73d401e178a69d593fa7a4566fe6a
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
17869c79de
gnu: r-tester: Disable tests.
* gnu/packages/cran.scm (r-tester)[arguments]: Disable tests.

Change-Id: I85ffcd3735018e267d020df95c9ceeef05a18e30
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
12e4ac2cca
gnu: r-tclust: Add missing inputs.
* gnu/packages/statistics.scm (r-tclust)[native-inputs]: Add r-cluster,
r-mclust, and r-sn.

Change-Id: I029d0fb895b24ecc796c76b93055e8203c7dfaae
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
b25f44b636
gnu: r-illuminaio: Add missing inputs.
* gnu/packages/bioconductor.scm (r-illuminaio)[native-inputs]: Add r-biocstyle
and r-illuminadatatestfiles.

Change-Id: I2a0cea6faf2f67e2b851944e442a2a541328349a
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
fefbe9d10b
gnu: Add r-illuminadatatestfiles.
* gnu/packages/bioconductor.scm (r-illuminadatatestfiles): New variable.

Change-Id: I6d1d3f342c8f6587557b18d5071d19e1e4e6aa28
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
369c73e702
gnu: r-gypsum: Disable tests.
* gnu/packages/bioconductor.scm (r-gypsum)[arguments]: Disable tests.

Change-Id: Ibec4e3986a6257b20e6a01a8286f1d6ce682171e
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
6e0a612dca
gnu: r-rpf: Add missing input.
* gnu/packages/cran.scm (r-rpf)[native-inputs]: Add r-mirt and r-numderiv.

Change-Id: Ib4a36600ca7c24897d7c8745ae0e387c22fe2998
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
86574e396c
gnu: r-cgdsr: Disable tests.
* gnu/packages/cran.scm (r-cgdsr)[arguments]: Disable tests.
[native-inputs]: Add r-testthat.

Change-Id: I66ef4d375c0f23f2271d56f9b424fee3ed6aa2da
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
174722e906
gnu: Add r-mirt.
* gnu/packages/cran.scm (r-mirt): New variable.

Change-Id: I2c4155632c0df6cc293e14470acbb7974e4511db
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
b578813187
gnu: Add r-simdesign.
* gnu/packages/cran.scm (r-simdesign): New variable.

Change-Id: Idd82a3a83f0bc8540823441a2848b4df56834d26
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
03d26034e3
gnu: r-sessioninfo: Add missing input.
* gnu/packages/cran.scm (r-sessioninfo)[native-inputs]: Add r-mockery.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: Ib45f9043d985a040d6f296f77166fb45048769cb
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
7e9aa79900
gnu: r-forestplot: Add missing input.
* gnu/packages/cran.scm (r-forestplot)[native-inputs]: Add r-dplyr and
r-tidyr.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I31efb7a69a311e25a41eec176567e8531ffa29e4
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
1bfe1a206f
gnu: Add r-greg.
* gnu/packages/cran.scm (r-greg): New variable.

Change-Id: I67b2f7384a7927f8f985c9aee558af7d1b0edc24
2024-12-03 16:59:50 +01:00
Ricardo Wurmus
16632b6cdb
gnu: Add r-gmisc.
* gnu/packages/cran.scm (r-gmisc): New variable.

Change-Id: I54c7b6d5cb3c375a6fef1418654f552f3956d493
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
ed6e2124f0
gnu: Add r-dcurver.
* gnu/packages/cran.scm (r-dcurver): New variable.

Change-Id: I8ab58dc4258bb786f00a2a9e7f0a5cdf336ddcb6
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
32ec8e8e18
gnu: r-matrixextra: Add missing input.
* gnu/packages/cran.scm (r-matrixextra)[native-inputs]: Add r-data-table.

Change-Id: I68ebef6de7b0f03166304ab93cc3dbb44d84661a
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
c8529fc172
gnu: Add r-beepr.
* gnu/packages/cran.scm (r-beepr): New variable.

Change-Id: I57c31192998960f915f405bc82f66413e650f7aa
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
0f501b0be6
gnu: Add r-audio.
* gnu/packages/cran.scm (r-audio): New variable.

Change-Id: I9a4e49aae1510af81d512ee9f0bfb4fab006b345
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
4b2c4cd782
gnu: Add r-rpushbullet.
* gnu/packages/cran.scm (r-rpushbullet): New variable.

Change-Id: I7f7e06e55bdefe6df19ec9f4890e12fa74d83c90
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
88bfa608ea
gnu: r-ibreakdown: Disable tests.
* gnu/packages/cran.scm (r-ibreakdown)[arguments]: Disable tests.

Change-Id: Ia0d573ecdd12e68689b330d9c2e1899e8a3515f8
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
d04ef17f26
gnu: r-partr2: Add missing inputs.
* gnu/packages/cran.scm (r-partr2)[native-inputs]: Add r-furrr and r-future.

Change-Id: Ie4c9cc7bf8330cffa3a1f83f960ccf8a290ae942
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
d5ded222d6
gnu: r-trnadbimport: Add missing input.
* gnu/packages/bioconductor.scm (r-trnadbimport)[native-inputs]: Add
r-httptest.

Change-Id: Ib654aa76d9a960c3d6cbc50264536af400bfd3e5
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
8c00a84f72
gnu: r-ingredients: Disable tests.
* gnu/packages/cran.scm (r-ingredients)[arguments]: Disable tests.

Change-Id: I8e97f856f3b089bd6e9c04f75d3b61556d7f3f07
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
d352e2ac18
gnu: r-dropbead: Disable tests.
* gnu/packages/bioinformatics.scm (r-dropbead)[native-inputs]: Add
r-data-table.
[arguments]: Disable tests.

Change-Id: I48c74a7b4253695ab5c877f6f1cebdca6ed42cb7
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
f8d38c785d
gnu: r-sleuth: Disable tests.
* gnu/packages/bioinformatics.scm (r-sleuth)[native-inputs]: Add r-testthat.
[arguments]: Disable tests.

Change-Id: Ib060eb18f8964212eb38b7025a35c16f0aca97b9
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
60b8b6de35
gnu: r-citr: Add missing input.
* gnu/packages/cran.scm (r-citr)[native-inputs]: Add r-testthat.

Change-Id: Ie6e1ee1513354407ab77df15b475565ede52134d
2024-12-03 16:59:49 +01:00
Ricardo Wurmus
e7bab6cb2c
gnu: r-rbokeh: Add missing input.
* gnu/packages/cran.scm (r-rbokeh)[native-inputs]: Add r-testthat.

Change-Id: Icaa91d29d91b9cf05a0b6da457332d5283936633
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
1e7881c462
gnu: r-rxnat: Add missing inputs.
* gnu/packages/cran.scm (r-rxnat)[native-inputs]: Add r-testthat.

Change-Id: If18efa654f8b1c85655a4d3f403a796e0613b698
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
cc3d2e78ed
gnu: r-ggsankey: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-ggsankey)[native-inputs]: Add r-testthat.

Change-Id: Iaafb75cc47e89a4a25232003d410f98c304ff021
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
92394b5116
gnu: r-languageserver: Add missing inputs.
* gnu/packages/statistics.scm (r-languageserver)[native-inputs]: Add r-mockery
and r-testthat.

Change-Id: I8e1d597a32fbec93a34b13943d879ff08050d1be
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
c777e6ba75
gnu: r-streamgraph: Add missing input.
* gnu/packages/bioinformatics.scm (r-streamgraph)[native-inputs]: Add
r-testthat.

Change-Id: I1209a467c5a966c916f0d0416c6c1e283ae9226d
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
dd561e0cf7
gnu: r-signac: Add missing input.
* gnu/packages/bioinformatics.scm (r-signac)[native-inputs]: Add r-testthat.

Change-Id: I0aacabf77171903cca2bc0f443f77e479b6331b2
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
88044b1134
gnu: r-flexsurv: Add missing inputs.
* gnu/packages/cran.scm (r-flexsurv)[native-inputs]: Add r-broom and r-covr.

Change-Id: I5b833f146f13cc708734fbf7ecda890865cf18aa
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
3398073471
gnu: r-covr: Add missing inputs.
* gnu/packages/cran.scm (r-covr)[native-inputs]: Add r-dt, r-htmltools,
r-memoise, r-mockery, r-rstudioapi, and r-xml2.

Change-Id: Id328c561e454942230577f0482fed692d5080328
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
ce60b11460
gnu: r-anvil: Add missing input.
* gnu/packages/bioconductor.scm (r-anvil)[native-inputs]: Add r-testthat.

Change-Id: Id8cc0f631a7923204d0778d3e2da1b15c7d4fc68
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
e4181d52d5
gnu: r-caret: Add missing inputs.
* gnu/packages/cran.scm (r-caret)[native-inputs]: Add r-fastica, r-mlmetrics,
and r-themis.

Change-Id: Ie165ff3c0c39146f12ea5018e8b5fc07e3d5cc26
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
aa82fa478b
gnu: Add r-themis.
* gnu/packages/cran.scm (r-themis): New variable.

Change-Id: I647994ad7e0b377130bccb08790acf3b55dd9005
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
ec3f52f1a8
gnu: Add r-rose.
* gnu/packages/cran.scm (r-rose): New variable.

Change-Id: I403f1ca3bd7d9d5bf13045e9e6f1a1809f3622d9
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
07dbd4a5a7
gnu: Add r-mlmetrics.
* gnu/packages/cran.scm (r-mlmetrics): New variable.

Change-Id: I62509d35b334033054049dbc62d1fce7c9d47e48
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
8607b2eece
gnu: r-biobroom: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biobroom)[native-inputs]: Add r-deseq2 and
r-edger.

Change-Id: I231026845896b2162d34724ba405a2f5bbacc56e
2024-12-03 16:59:48 +01:00
Ricardo Wurmus
b6cd326070
gnu: r-enhancedvolcano: Add missing input.
* gnu/packages/bioconductor.scm (r-enhancedvolcano)[native-inputs]: Add
r-biocgenerics.

Change-Id: I416f27e0e0f2e0c237e29f9ca6b5edeccebbec76
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
3f2531f918
gnu: r-biocset: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocset)[native-inputs]: Add r-gseabase and
r-org-hs-eg-db.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I062af0403952e209b07488afa5b939bee60cadc0
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
965dd8b3bc
gnu: r-graphite: Disable tests.
* gnu/packages/bioconductor.scm (r-graphite)[native-inputs]: Add r-checkmate.
[arguments]: Disable tests.

Change-Id: Ia69467f2c1516ff3510a3e7ae422f9d031fecc1f
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
81a4b8be20
gnu: r-gseabase: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gseabase)[native-inputs]: Add r-go-db,
r-hgu95av2, r-hgu95av2-db, r-org-hs-eg-db, and r-runit.

Change-Id: I302caa7aa57487009272a3c361bd864a474afcf2
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
5a29c7f69f
gnu: Add r-hgu95av2.
* gnu/packages/bioconductor.scm (r-hgu95av2): New variable.

Change-Id: Ibbadbfd247755c54e56cc22ec59172c4da098bdf
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
cb630fa340
gnu: r-riboseqr: Add missing input.
* gnu/packages/bioconductor.scm (r-riboseqr)[native-inputs]: Add r-biocstyle.

Change-Id: I969eb0cea1051578d785a04adb5fd7770b18ab62
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
1c86cc30f5
gnu: r-survey: Add missing inputs.
* gnu/packages/cran.scm (r-survey)[native-inputs]: Add r-aer, r-mass, and
r-rsqlite.
[arguments]: Add phase 'set-HOME.

Change-Id: I6cac861edb1672cbcad3a76846223ba812224681
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
d4893e7340
gnu: r-biocviews: Disable tests.
* gnu/packages/bioconductor.scm (r-biocviews)[arguments]: Disable tests.

Change-Id: Ic66fd71421b041098da31a38d7101b1bf013110a
2024-12-03 16:59:47 +01:00
Ricardo Wurmus
62202e9190
gnu: r-boruta: Add missing inputs.
* gnu/packages/cran.scm (r-boruta)[native-inputs]: Add r-rferns.

Change-Id: I04475e0d30040203f958ee473d5bb1e3e23634d8
2024-12-03 16:59:47 +01:00