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Author SHA1 Message Date
Ricardo Wurmus
17068bce87
gnu: Add r-cosinor. 
* gnu/packages/cran.scm (r-cosinor): New variable.

Change-Id: Iaecb697c68c51bfb0e1c9b184dee8bfb50c9ac33
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
7b5b76c18c
gnu: r-anndatar: Add test inputs. 
* gnu/packages/bioinformatics.scm (r-anndatar)[native-inputs]: Add r-rhdf5,
r-seuratobject, r-singlecellexperiment, and r-testthat.

Change-Id: I233a1f7216241b5d9d8301e07acdf811edb24a28
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
9bc5f625db
gnu: r-pander: Add missing inputs. 
* gnu/packages/cran.scm (r-pander)[native-inputs]: Add
pandoc, r-lattice, and r-testthat.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: Ib1c27b0883a153bc92334f2ad3928380f470d95a
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
fb8f5b8c37
gnu: r-acde: Disable tests. 
* gnu/packages/bioconductor.scm (r-acde)[arguments]: Disable tests.
[native-inputs]: Add r-biocgenerics.

Change-Id: I801951e942c80843bbdd6bc2eb63a31ddaf365a2
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
f848e45061
gnu: r-chemmineob: Skip tests. 
* gnu/packages/bioconductor.scm (r-chemmineob)[arguments]: Only build
vignettes.

Change-Id: I8dae82ac4226c33a18009131b7e17662af84589b
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
4877fc040f
gnu: r-chemminer: Add missing inputs. 
* gnu/packages/bioconductor.scm (r-chemminer)[native-inputs]: Add
r-chemmineob, r-rsqlite, r-runit, and r-snow.

Change-Id: I625ae09918c3bdf9b7248e61c6d4959f67175f45
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
dc9388e01c
gnu: r-rcppml/devel: Add missing input. 
* gnu/packages/machine-learning.scm (r-rcppml/devel)[native-inputs]: Add
r-testthat.

Change-Id: I6a5c29c82d2417d53684dbb278ce4b1703988ffa
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
bd6912da83
gnu: r-rsvg: Add missing input. 
* gnu/packages/cran.scm (r-rsvg)[native-inputs]: Add r-spelling.

Change-Id: Ie31fbf1a745acca112bda7e8432c02c3e9141c9f
 2024-12-03 16:59:36 +01:00
Ricardo Wurmus
1b8e375054
gnu: r-codedepends: Add missing input. 
* gnu/packages/bioconductor.scm (r-codedepends)[native-inputs]: Add
r-rgraphviz.

Change-Id: I1d122d4ac01b003ea6de5fb1df99399839fcea4d
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
9cd3a19a36
gnu: r-rgdal: Add missing input. 
* gnu/packages/cran.scm (r-rgdal)[native-inputs]: Add r-sf.

Change-Id: I5ec21fbab319aa71b32a3adc2fd6484bc0a3becf
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
cd3dc610da
gnu: r-spacetime: Do not build vignettes. 
* gnu/packages/cran.scm (r-spacetime)[arguments]: Skip vignettes.

Change-Id: I6ea95012e88ef868b516524dea32d6b1c2248a46
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
6208c2d334
gnu: r-rgeos: Add missing inputs. 
* gnu/packages/cran.scm (r-rgeos)[native-inputs]: Add r-testthat and r-xml.

Change-Id: I34ad60f5f342aadd8494ba436e31c3fbf1a873b5
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
7a91b799e9
gnu: r-geneoverlap: Add missing inputs. 
* gnu/packages/bioconductor.scm (r-geneoverlap)[native-inputs]: Add
r-biocgenerics and r-biocstyle.

Change-Id: I538015455338a1ae8991e3b3a63bc2a951ad1d36
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
506ab55394
gnu: r-rgraphviz: Add missing input. 
* gnu/packages/bioconductor.scm (r-rgraphviz)[native-inputs]: Add r-xml.
[arguments]: Remove trailing #T.

Change-Id: I08df02db7f4a9d224cee5516c5bb15c836e79f7b
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
a06e1e25e4
gnu: r-spatstat-core: Add missing input. 
* gnu/packages/cran.scm (r-spatstat-core)[native-inputs]: Add
r-spatstat-model.

Change-Id: If8129db5645af1a6c97bb0505e2220198b573579
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
61bc2bf53f
gnu: r-genetclassifier: Add missing input. 
* gnu/packages/bioconductor.scm (r-genetclassifier)[native-inputs]: Add
r-leukemiaseset.

Change-Id: Ic2d2915acb5964b83212a6124b6e596b4f13c006
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
363b13284b
gnu: Add r-leukemiaseset. 
* gnu/packages/bioconductor.scm (r-leukemiaseset): New variable.

Change-Id: Ida95165c48e074dbf841ec2c43ad3fb7da025fa3
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
37246ab9da
gnu: r-rcppde: Add test input. 
* gnu/packages/cran.scm (r-rcppde)[native-inputs]: Add r-lattice.

Change-Id: Ibc945e3de2e055ed57e5451d9de5f08fe04679b3
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
fbe8f8c0a2
gnu: r-aims: Add test inputs. 
* gnu/packages/bioconductor.scm (r-aims)[native-inputs]: Add
r-breastcancervdx and r-hgu133a-db.

Change-Id: I980638a323893d1c4d00cfa2b23b3f5367aad9a5
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
4649320397
gnu: Add r-hgu133a-db. 
* gnu/packages/bioconductor.scm (r-hgu133a-db): New variable.

Change-Id: I200ec7534c32e701ecc3117e04c5a10ea9a9ebf8
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
99b03d536a
gnu: r-diversitree: Disable tests. 
* gnu/packages/cran.scm (r-diversitree)[arguments]: Only build vignettes.
[native-inputs]: Add r-caper, r-expm, r-lubridate, r-minqa, and r-testthat.

Change-Id: I39a584112cddbfee2b4429c4d3a070f5d6c3a2cc
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
545e1f8252
gnu: Remove r-xmisc. 
This package has been broken for a while and has been archived on CRAN due to
build errors and inactivity.

* gnu/packages/cran.scm (r-xmisc): Remove variable.

Change-Id: I0e558c13ba6c6694a1d9163c1a42bb4108c3dd33
 2024-12-03 16:59:35 +01:00
Ricardo Wurmus
271a602b9a
gnu: r-performanceanalytics: Add test inputs. 
* gnu/packages/cran.scm (r-performanceanalytics)[native-inputs]: Add r-hmisc
and r-r-rsp.
[arguments]: Add phase 'set-HOME.

Change-Id: Ie8924d4d15fc45071144ae97e6bded22cefdc209
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
d76e15fc88
gnu: r-h5: Add test inputs. 
* gnu/packages/cran.scm (r-h5)[native-inputs]: Add r-knitr and r-testthat.

Change-Id: I04ebf7186f1646d537cda9fe0a971db2b2ffbc5b
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
994cfb5063
gnu: r-hmisc: Disable tests. 
* gnu/packages/statistics.scm (r-hmisc)[arguments]: Only build vignettes.
[native-inputs]: Add r-mvtnorm.

Change-Id: I1ae7536e6256ddb145a8b2de05e2140dfe0054ea
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
b9d031b58d
gnu: r-pbdmpi: Disable tests. 
* gnu/packages/cran.scm (r-pbdmpi)[arguments]: Only build vignettes.

Change-Id: I7aa190e24fd4172605c773c0508654c42ff0e1fc
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
14e4bf40e4
gnu: r-grimport: Add test input. 
* gnu/packages/cran.scm (r-grimport)[native-inputs]: Add r-lattice.
[arguments]: Skip building vignettes.

Change-Id: If79ccf922de1e4d87c6853bb3dc5db4a82fa2b9a
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
41506a7e3c
gnu: r-maxstat: Add test input. 
* gnu/packages/cran.scm (r-maxstat)[native-inputs]: Add r-survival.

Change-Id: Id9d3b2e61545917973b6744e7687f179df278455
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
271ac4359f
gnu: r-grimport2: Add test input. 
* gnu/packages/cran.scm (r-grimport2)[native-inputs]: Add r-gridsvg.

Change-Id: I4fa1d4455b60b221a68a9fb70e905ddd753202a4
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
92976d5523
gnu: r-gridsvg: Add test inputs. 
* gnu/packages/cran.scm (r-gridsvg)[native-inputs]: Add r-lattice.

Change-Id: Icbe34211c7bd9c290d14281fc6e3a130d754d287
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
826b2f0d4c
gnu: r-dyn: Add test inputs. 
* gnu/packages/cran.scm (r-dyn)[native-inputs]: Add r-sandwich.

Change-Id: I9e05ba91418a4f9ae2cd4880c06fbeecd54a07c8
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
34fbbe52e3
gnu: Add r-caper. 
* gnu/packages/cran.scm (r-caper): New variable.

Change-Id: Ie9953748f3703784c6e89f93fe3cc39e11cafca5
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
eb24727e1b
gnu: r-roptim: Add test inputs. 
* gnu/packages/cran.scm (r-roptim)[native-inputs]: Add r-r-rsp and r-testthat.
[arguments]: Add phase 'set-HOME.

Change-Id: Ib2dce8bfe4480e81855cc34baf1daa2765bd2259
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
e7f7087665
gnu: r-littler: Add missing input. 
* gnu/packages/cran.scm (r-littler)[inputs]: Add libdeflate.

Change-Id: I9c9488f298db8acbb50cb674c7efb7f752350c34
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
9e90b65b6f
gnu: r-matrix-utils: Add test input. 
* gnu/packages/cran.scm (r-matrix-utils)[native-inputs]: Add r-testthat.

Change-Id: Ieb4e25ec1b1ddb4d0a20c5ceefc15b9ceb29cd2c
 2024-12-03 16:59:34 +01:00
Ricardo Wurmus
edc47867bf
gnu: r-git2r: Add test input. 
* gnu/packages/statistics.scm (r-git2r)[native-inputs]: Add tzdata-for-tests.

Change-Id: I1643a38b62b5e9d92a64d1d4bf7d44a4d2e62ecc
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
9bfe420ebf
gnu: r-tree: Add test input. 
* gnu/packages/cran.scm (r-tree)[native-inputs]: Add r-mass.

Change-Id: I8c6088f91a5e31adbe9adb55287176998029b7fb
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
d073dd7470
gnu: r-secretbase: Fix tests. 
* gnu/packages/cran.scm (r-secretbase)[arguments]: Add phase 'set-HOME.

Change-Id: I26ce3293cbc406de2a09ed4bac6ee45d7c08b9b5
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
3aaf4a680e
gnu: r-xmapbridge: Add test input. 
* gnu/packages/bioconductor.scm (r-xmapbridge)[native-inputs]: Add
r-rcolorbrewer.

Change-Id: I231a68e013192a9ce669f23c4a5342ee917ffede
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
494d4758ea
gnu: r-signal: Add test input. 
* gnu/packages/cran.scm (r-signal)[native-inputs]: Add r-pracma.

Change-Id: I62ff2b66f14eb6aad2019c6763e4848d57fe100c
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
374f87e974
gnu: r-preprocesscore: Disable tests. 
* gnu/packages/bioconductor.scm (r-preprocesscore)[arguments]: Disable tests.

Change-Id: If3704b4fdf712b8ab65c02f55ed1c0cefc64fc8e
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
29fe23ca3d
gnu: r-fit-models: Add test input. 
* gnu/packages/statistics.scm (r-fit-models)[native-inputs]: Add r-mass.

Change-Id: I97008b4f28248ed38e5a94676c3396e52c742242
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
5ee7f7cc37
gnu: r-assertive-base: Add test inputs. 
* gnu/packages/bioconductor.scm (r-iclusterplus)[native-inputs]: Add r-testthat.

Change-Id: I7aaae367d8db4a3f3e4951820fec4a37ba6fd473
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
9de7e2b512
gnu: r-rjava: Add missing input. 
* gnu/packages/cran.scm (r-rjava)[inputs]: Add libdeflate.

Change-Id: Id6d3a79ff77a19f2f42a3f22e6b4c1a509146237
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
8ffb514759
gnu: r-iclusterplus: Add test inputs. 
* gnu/packages/bioconductor.scm (r-iclusterplus)[native-inputs]: Add r-biocgenerics.

Change-Id: Ic533681df4abd0f4d73a40ba4e3cf00a9d3fb1f2
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
016b1d2c11
gnu: r-mcmc: Add test inputs. 
* gnu/packages/cran.scm (r-mcmc)[native-inputs]: Add r-iso and r-xtable.

Change-Id: I9da2118db506e357bd0500e5ddf65566fa33298c
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
d3d9e5f4cc
gnu: r-tgconfig: Add test input. 
* gnu/packages/statistics.scm (r-tgconfig)[native-inputs]: Add r-testthat.

Change-Id: Ie016b7a90ff39d9023f4e9499b32b1ea151ae3d4
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
6fbccc0200
gnu: r-bb: Add test inputs. 
* gnu/packages/cran.scm (r-bb)[native-inputs]: Add r-numderiv and r-setrng.
[arguments]: Disable building vignettes.

Change-Id: Ib0b9d7fb96e2a246495ce41b7dcb41aa7331f6aa
 2024-12-03 16:59:33 +01:00
Ricardo Wurmus
18d8e6525d
gnu: r-perm: Add test input. 
* gnu/packages/cran.scm (r-perm)[native-inputs]: Add r-coin.

Change-Id: I8eaf82a8e8b238f264a0757e19af9b3c3cb984a0
 2024-12-03 16:59:32 +01:00
Ricardo Wurmus
d9ae3c18bb
gnu: r-rann-l1: Add test input. 
* gnu/packages/cran.scm (r-rann-l1)[native-inputs]: Add r-testthat.

Change-Id: Ic98cd970b35287520a0d5d83f3398b714ae42f0f
 2024-12-03 16:59:32 +01:00