Ricardo Wurmus
|
4d9edaea55
|
gnu: r-annotationforge: Add missing inputs.
* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add
r-go-db.
Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
950c313757
|
gnu: r-greylistchip: Add missing inputs.
* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add
r-biocstyle.
Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
eb3634d398
|
gnu: r-omnipathr/devel: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-omnipathr/devel)[native-inputs]: Add
r-testthat.
Change-Id: I7e339871d65ed0ff263db14ff9fb0aa1bb3ed0bb
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
77408833a7
|
gnu: r-pcatools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran.
Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
561335a095
|
gnu: r-sva: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle,
r-bladderbatch, r-pamr, and r-zebrafishrnaseq.
Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
f601948c72
|
gnu: Add r-zebrafishrnaseq.
* gnu/packages/bioconductor.scm (r-zebrafishrnaseq): New variable.
Change-Id: I5fe044acef56aba8601fea9cc766bbf69594714b
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
270b9439c0
|
gnu: r-mlinterfaces: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mlinterfaces)[native-inputs]: Add
r-golubesets.
Change-Id: I509c44b49974c423ce138db74dc0275de5a6570d
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
d597926171
|
gnu: Add r-oligodata.
* gnu/packages/bioconductor.scm (r-oligodata): New variable.
Change-Id: I605b877f91c068180c55da5ecbbd62b6071fde3c
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
eb230cc991
|
gnu: Add r-pd-mapping50k-hind240.
* gnu/packages/bioconductor.scm (r-pd-mapping50k-hind240): New variable.
Change-Id: I11680ac9b36494565f22f83cc4cae49f8d751b13
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
f9ed7c0337
|
gnu: r-oligo: Disable tests.
* gnu/packages/bioconductor.scm (r-oligo)[arguments]: Disable tests.
Change-Id: Ief8655fed61142efa86cdf0170e417fde2f4c617
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
a9a8e9f773
|
gnu: r-oligoclasses: Disable tests.
* gnu/packages/bioconductor.scm (r-oligoclasses)[arguments]: Disable tests.
Change-Id: I0f8513449464a7fce0a353bcaf62b67bc58f31fe
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
38be84b4ff
|
gnu: r-oligoclasses: Add missing inputs.
* gnu/packages/bioconductor.scm (r-oligoclasses)[native-inputs]: Add
r-genomewidesnp6crlmm and r-human370v1ccrlmm.
Change-Id: I597e4fe28ec054376a8a4bbf2f87492d1a7bdce1
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
dc973bcc2c
|
gnu: Add r-human370v1ccrlmm.
* gnu/packages/bioconductor.scm (r-human370v1ccrlmm): New variable.
Change-Id: I46b8f5aa896fb1357cfe0329bbd6e25d7fd9db9c
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
69b9c4e8df
|
gnu: Add r-genomewidesnp6crlmm.
* gnu/packages/bioconductor.scm (r-genomewidesnp6crlmm): New variable.
Change-Id: I6291cc56961076ecff1fba835e936036e7fdf35b
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
21b2a8d8d7
|
gnu: r-linnorm: Add missing inputs.
* gnu/packages/bioconductor.scm (r-linnorm)[native-inputs]: Add r-matrixstats
and r-moments.
Change-Id: I5b1273c24d865bf90b481f426a3cc70032bdfc47
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
ed094d6a84
|
gnu: r-varianttools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-varianttools)[native-inputs]: Add
r-lungcancerlines.
Change-Id: I0d9d226a15d56d5ff9873ccc3b2f1b7cad31d8af
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
63849ba3f0
|
gnu: Add r-lungcancerlines.
* gnu/packages/bioconductor.scm (r-lungcancerlines): New variable.
Change-Id: I4f688432cf3ec4361cd870ef12abef8678a5f665
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
a5c6cbfa04
|
gnu: r-millefy: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-millefy)[native-inputs]: Add r-testthat.
Change-Id: Id5d1f74074f05f1af2e3726e9a9e49f2d63f13c9
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
8be212d7ab
|
gnu: r-structuralvariantannotation: Add missing inputs.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation)
[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19 and r-tidyverse.
Change-Id: I2f91947e09b046f314faefc86bd2bbfdd7bf14de
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
63c0dfb1ae
|
gnu: r-annmap: Fix tests.
* gnu/packages/bioconductor.scm (r-annmap)[arguments]: Add phase 'set-HOME.
Change-Id: I0962b8da16f121bca7b5f1b619386447875dd108
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
165bc87cf5
|
gnu: r-chipcomp: Add missing inputs.
* gnu/packages/bioconductor.scm (r-chipcomp)[native-inputs]: Add r-biocstyle.
Change-Id: I7aeab9d0169480602286bce5f1374b70d2c50e75
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
151e80bc58
|
gnu: r-mutationalpatterns: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mutationalpatterns)[native-inputs]: Add
r-ccfindr.
Change-Id: I294c6c4d361c70c55e58509b2ff6512c24dd3978
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
fc34bab491
|
gnu: r-zonator: Add test inputs.
* gnu/packages/cran.scm (r-zonator)[native-inputs]: Add r-testthat.
Change-Id: I9cf262f2176b770d229fb0c7d9df217e9ab8a45c
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
f956b87c9b
|
gnu: Add r-ccfindr.
* gnu/packages/bioconductor.scm (r-ccfindr): New variable.
Change-Id: Icc76252494a1750888b8218df36ed002096c0268
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
bdfc8312a2
|
gnu: Add r-fmesher.
* gnu/packages/cran.scm (r-fmesher): New variable.
Change-Id: Ic9abf1b6ca383dba429366324b40877d4f51245a
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
faaa775ddb
|
gnu: r-abn: Add test inputs.
* gnu/packages/bioconductor.scm (r-abn)[arguments]: Add phase
'delete-bad-tests.
[native-inputs]: Add r-entropy, r-moments, and r-rhpcblasctl.
Change-Id: Id981a537882ecc620232049e6831de657ec7f29a
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
651a7580c9
|
gnu: r-singlet: Add test inputs.
* gnu/packages/bioinformatics.scm (r-singlet)[native-inputs]: Add r-testthat.
Change-Id: I617f6bbb9e11ef00148571b94a4aaf2d445cfcb2
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
58956c6d11
|
gnu: r-rapportools: Disable tests.
* gnu/packages/cran.scm (r-rapportools)[arguments]: Disable tests.
Change-Id: Ied42ce54bea57a36f4885b5e0093fe9d3b8da03e
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
845f7ef47e
|
gnu: r-zoon: Disable tests.
* gnu/packages/cran.scm (r-zoon)[arguments]: Disable tests.
Change-Id: I9d8c02c66fd95f1111914b02588f7841c2d46f39
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
8fa6b9673f
|
gnu: r-kegggraph: Add test inputs.
* gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes.
[native-inputs]: Add r-hgu133plus2-db and r-rbgl.
Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
593a3e6c0b
|
gnu: r-assertive-reflection: Add test input.
* gnu/packages/cran.scm (r-assertive-reflection)[native-inputs]: Add
r-testthat.
Change-Id: Id9a1bb673fe1644336639d4365d2f55b7478e02e
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
830cbfa7dc
|
gnu: r-assertive-models: Add test input.
* gnu/packages/cran.scm (r-assertive-models)[native-inputs]: Add r-testthat.
Change-Id: Idaadd19423d2a42ee8c3765ea0d5643dba430565
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
d65ac00f74
|
gnu: r-assertive-matrices: Add test input.
* gnu/packages/cran.scm (r-assertive-matrices)[native-inputs]: Add r-testthat.
Change-Id: Ia91eee2a7c8597b32833f3245b31398c4c03b0d8
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
a92deafb31
|
gnu: r-assertive-sets: Add test input.
* gnu/packages/cran.scm (r-assertive-sets)[native-inputs]: Add r-testthat.
Change-Id: I701a52e5cc9508b84f57452c81fb00c635331a3e
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
2dafa0d2d5
|
gnu: r-assertive-numbers: Add test input.
* gnu/packages/cran.scm (r-assertive-numbers)[native-inputs]: Add r-testthat.
Change-Id: Ib76e20c5955e8e8da5bbad0740311032a28032f4
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
c4075db316
|
gnu: r-assertive-properties: Add test inputs.
* gnu/packages/cran.scm (r-assertive-properties)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: Idb11a7bfb85dc6f5a4e365149488dd1996e7d8a5
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
0fb322eebc
|
gnu: r-snprelate: Add test inputs.
* gnu/packages/bioconductor.scm (r-snprelate)[native-inputs]: Add
r-biocgenerics and r-matrix.
Change-Id: Ie0f58fc3a94622a316213bc6f50d2f1e30199f1a
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
1563f82d9b
|
gnu: r-gwastools: Disable tests.
* gnu/packages/bioconductor.scm (r-gwastools)[arguments]: Disable tests.
Change-Id: Ie5a0d07995d54c5824dde99cf3854e0c69aac2e8
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
c7df5415fe
|
gnu: r-affy: Disable tests.
* gnu/packages/bioconductor.scm (r-affy)[arguments]: Disable tests.
Change-Id: Iad8b990c573e417d611c3198110d6dc42deb5e2b
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
bc4a5c0018
|
gnu: r-seqarray: Add test inputs.
* gnu/packages/bioconductor.scm (r-seqarray)[native-inputs]: Add r-digest,
r-matrix, and r-variantannotation.
Change-Id: Iea288da4b74c575c28187353d8235700c5595c46
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
4b97e8e4b8
|
gnu: r-tarchetypes: Disable tests.
* gnu/packages/cran.scm (r-tarchetypes)[arguments]: Only build vignettes.
[native-inputs]: Add r-rmarkdown.
Change-Id: If5bf4054be61275995b54a60ac8b63182cd36aca
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
92fa8df992
|
gnu: r-ancombc: Add missing input.
* gnu/packages/bioconductor.scm (r-ancombc)[native-inputs]: Add r-microbiome.
Change-Id: I3ef087c262f71fbc5703aa798adc285c0db687af
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
e0f22b9470
|
gnu: r-phyloseq: Add missing input.
* gnu/packages/bioconductor.scm (r-phyloseq)[native-inputs]: Add r-genefilter.
Change-Id: Iadc35d4721a69f37ba1370cc57e9320137c77738
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
5822e04f0c
|
gnu: r-bigpint: Disable tests.
* gnu/packages/bioconductor.scm (r-bigpint)[arguments]: Disable tests.
[native-inputs]: Add r-runit.
Change-Id: I755558ce65d00451586e35b2111bfd3de3890674
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
2109b5e81c
|
gnu: Add r-rtcga-rnaseq.
* gnu/packages/bioconductor.scm (r-rtcga-rnaseq): New variable.
Change-Id: I6e9287fe55da3f6db678603f115d790d273dacc2
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
49c0075061
|
gnu: r-rtcga: Disable tests.
* gnu/packages/bioconductor.scm (r-rtcga)[arguments]: Disable tests.
Change-Id: If33bac14355a89a1a75860d3f28216a0614a64b1
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
d20395cc50
|
gnu: r-biovizbase: Add missing input.
* gnu/packages/bioconductor.scm (r-biovizbase)[native-inputs]: Add
r-ensdb-hsapiens-v75.
Change-Id: I47b3e912af8af52f2168a111032662674327f86b
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
47a77af687
|
gnu: r-mediation: Skip vignettes.
* gnu/packages/cran.scm (r-mediation)[arguments]: Disable vignettes.
Change-Id: I7172f3822a57069ce14c1e3589056300d6497ce2
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
7276dc8e87
|
gnu: r-rms: Skip tests.
* gnu/packages/cran.scm (r-rms)[arguments]: Disable tests.
[native-inputs]: Add r-vgam.
Change-Id: Ia475863fc21cd4c8fdbcfc4f4a58eda3c086c99b
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
0f3733bc91
|
gnu: r-rliger: Add test inputs.
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase 'delete-bad-tests.
[native-inputs]: Add r-testthat.
Change-Id: I65efd90de0478532f5b322ce71c04bdc7461a84d
|
2024-12-03 10:54:07 +01:00 |
|