Ricardo Wurmus
|
8b1907470f
|
gnu: r-gofuncr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gofuncr)[native-inputs]: Add r-homo-sapiens.
Change-Id: I66d6e9985fc420c93eaf77afa348b7bbd29381c7
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
d3d701ded9
|
gnu: r-organismdbi: Disable tests.
* gnu/packages/bioconductor.scm (r-organismdbi)[arguments]: Disable tests.
Change-Id: I1a669db2ffc8f9e5bf00666bdfbc53a060508dc6
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
3b66f6eaa8
|
gnu: r-txdbmaker: Add test inputs.
* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
2c7f3e365c
|
gnu: Add r-rmariadb.
* gnu/packages/cran.scm (r-rmariadb): New variable.
Change-Id: I12ec88bb93170b4d59f62e3d89bf3d0e110b0eae
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
9115989ad8
|
gnu: r-biomart: Add test inputs.
* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2
and r-mockery.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
b03d4d4648
|
gnu: Add r-httptest2.
* gnu/packages/cran.scm (r-httptest2): New variable.
Change-Id: Iaaf40d07c1bea2213359857eeae86eeead90fbc4
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
0e5969cb8b
|
gnu: Add r-webfakes.
* gnu/packages/cran.scm (r-webfakes): New variable.
Change-Id: Ia7bcf571bfbefe046b6fbd129a969fd118cf0760
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
fbadfceaa0
|
gnu: r-metagenomeseq: Add test inputs.
* gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
2ac5589b47
|
gnu: r-ioniser: Add missing inputs.
* gnu/packages/bioconductor.scm (r-ioniser)[native-inputs]: Add
r-minionsummarydata.
Change-Id: Ie478db21c33c6d279937678b8103cca5df228a09
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
f6cadbee05
|
gnu: Add r-minionsummarydata.
* gnu/packages/bioconductor.scm (r-minionsummarydata): New variable.
Change-Id: I61318a1338bbff117e38d3ce5963dd061e5175a9
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
6b601eb88a
|
gnu: r-rnacrosslinkoo: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-rnacrosslinkoo)[native-inputs]: Add
r-testthat.
Change-Id: Iedd2dee7a32dcd19a99d25d92b6f453dd197f5b4
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
f714066523
|
gnu: r-glimma: Add missing inputs.
* gnu/packages/bioconductor.scm (r-glimma)[native-inputs]: Add r-pryr.
Change-Id: I9109cc636e758df436aaae38c3b2bd735b1e4cc0
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
ab1832bd42
|
gnu: r-systempiper: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-systempiper)[native-inputs]: Add
r-systempiperdata.
[arguments]: Disable tests.
Change-Id: Ic071bbcb53ef9fb96385fbbdb5725ed2a4490db7
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
bff0dcfaff
|
gnu: r-roar: Add missing inputs.
* gnu/packages/bioconductor.scm (r-roar)[native-inputs]: Add
r-rnaseqdata-hnrnpc-bam-chr14.
Change-Id: Ic5fa181d52e87ba7039e0000f5610eb46150bbfc
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
7c4f1bc424
|
gnu: Add r-systempiperdata.
* gnu/packages/bioconductor.scm (r-systempiperdata): New variable.
Change-Id: I125e8003073ffc5fa7f20d3efa0f3ead71eaafe3
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
bb7b854ad4
|
gnu: r-sgseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
40befd7f1e
|
gnu: Add r-rnaseqdata-hnrnpc-bam-chr14.
* gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): New variable.
Change-Id: If2f9bf10e3e1396cfd31e3278020d623ce2253e0
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
073056638c
|
gnu: r-bedtorch: Disable tests.
* gnu/packages/bioinformatics.scm (r-bedtorch)[arguments]: Disable tests.
[native-inputs]: Add r-testthat.
Change-Id: Ia06aca330528eb2b9eea569d5d12db0f12d6511e
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
e0c512a00a
|
gnu: r-bioqc: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-ineq.
Change-Id: I090a0d25f87d23119e66a69ca37c16d7b384a01a
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
d75c2ab5de
|
gnu: r-organism-dplyr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-organism-dplyr)[native-inputs]: Add
r-txdb-hsapiens-ucsc-hg38-knowngene and r-txdb-mmusculus-ucsc-mm10-ensgene.
Change-Id: I1dbf8d71f9a29d1a95e70a4b44042155af4a1222
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
1be441ce2b
|
gnu: r-genomicdatacommons: Delete bad tests.
* gnu/packages/bioconductor.scm (r-genomicdatacommons)[arguments]: Add phase
'delete-bad-tests.
Change-Id: I9e09a99cc3e07d4d3a568d1058c717a74de925bc
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
5059e00e19
|
gnu: Add r-txdb-mmusculus-ucsc-mm10-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-ensgene): New variable.
Change-Id: I5caa7d292ea0f81df5acf3f522fd3cf1ca9acb13
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
38fc3af466
|
gnu: r-ctrdata: Fix vignettes.
* gnu/packages/cran.scm (r-ctrdata)[arguments]: Add phase 'set-HOME.
Change-Id: I0191e69b9970fd0fe2c85dffa19839b94760befd
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
09cfee2d5e
|
gnu: r-megadepth: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add
megadepth.
[arguments]: Disable tests.
[inputs]: Remove empty field.
[properties]: Tell updater to keep megadepth as a propagated input.
Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
955b2aadaf
|
gnu: r-alpine: Add missing inputs.
* gnu/packages/bioconductor.scm (r-alpine)[native-inputs]: Add r-testthat.
Change-Id: I0dece0c9def13b5aed392b0a8404ee96e3d57ab5
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
95c7c27dca
|
gnu: r-tgutil: Add missing inputs.
* gnu/packages/statistics.scm (r-tgutil)[native-inputs]: Add r-testthat.
Change-Id: Idb64f13cfcd01db56362fb77c4aca41095e4cf0a
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
850ec1b9c0
|
gnu: r-biocdockermanager: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add
r-testthat.
Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
8c914f51ee
|
gnu: r-motifdb: Add missing inputs.
* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo.
Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
12a40c7701
|
gnu: r-dittoseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add
r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and
r-plotly.
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
d0b406f8dc
|
gnu: r-vipor: Disable vignettes.
* gnu/packages/statistics.scm (r-vipor)[arguments]: Disable vignettes.
Change-Id: I58c8e4b7b7eb6d6f1693f34199721fd0bcbf6c82
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
f3463b0d5f
|
gnu: r-presto: Add missing inputs.
* gnu/packages/bioconductor.scm (r-presto)[native-inputs]: Add r-testthat.
Change-Id: I3fe5ec83478e384fe34701b0672b6f216255b1d6
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
a006ba48d9
|
gnu: r-complexheatmap: Add missing inputs.
* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add
r-dendextend, r-genomicranges, and r-gridtext.
Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
df6060bd1b
|
gnu: r-fishpond: Add missing inputs.
* gnu/packages/bioconductor.scm (r-fishpond)[native-inputs]: Add r-data-table,
r-deseq2, and r-samr.
Change-Id: I5e3c827f274a20ff410287f39b3a57de66b77f01
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
aacfdaeb3f
|
gnu: r-psiplot: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-psiplot)[native-inputs]: Add r-testthat.
Change-Id: I19ad7216f86968c87abad64313bf09d03e3ad612
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
4c188a1a84
|
gnu: r-geoquery: Disable tests.
* gnu/packages/bioconductor.scm (r-geoquery)[arguments]: Disable tests.
Change-Id: Ibd30534cfb1f6bd4927f16908a749dd1881932e4
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
b584e5f1fe
|
gnu: r-productplots: Add missing inputs.
* gnu/packages/cran.scm (r-productplots)[native-inputs]: Add r-reshape2.
Change-Id: Id1604a4859b2fef076dd1485b25ae185175173e0
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
4d9edaea55
|
gnu: r-annotationforge: Add missing inputs.
* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add
r-go-db.
Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
950c313757
|
gnu: r-greylistchip: Add missing inputs.
* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add
r-biocstyle.
Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
eb3634d398
|
gnu: r-omnipathr/devel: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-omnipathr/devel)[native-inputs]: Add
r-testthat.
Change-Id: I7e339871d65ed0ff263db14ff9fb0aa1bb3ed0bb
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
77408833a7
|
gnu: r-pcatools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran.
Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
561335a095
|
gnu: r-sva: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle,
r-bladderbatch, r-pamr, and r-zebrafishrnaseq.
Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
f601948c72
|
gnu: Add r-zebrafishrnaseq.
* gnu/packages/bioconductor.scm (r-zebrafishrnaseq): New variable.
Change-Id: I5fe044acef56aba8601fea9cc766bbf69594714b
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
270b9439c0
|
gnu: r-mlinterfaces: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mlinterfaces)[native-inputs]: Add
r-golubesets.
Change-Id: I509c44b49974c423ce138db74dc0275de5a6570d
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
d597926171
|
gnu: Add r-oligodata.
* gnu/packages/bioconductor.scm (r-oligodata): New variable.
Change-Id: I605b877f91c068180c55da5ecbbd62b6071fde3c
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
eb230cc991
|
gnu: Add r-pd-mapping50k-hind240.
* gnu/packages/bioconductor.scm (r-pd-mapping50k-hind240): New variable.
Change-Id: I11680ac9b36494565f22f83cc4cae49f8d751b13
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
f9ed7c0337
|
gnu: r-oligo: Disable tests.
* gnu/packages/bioconductor.scm (r-oligo)[arguments]: Disable tests.
Change-Id: Ief8655fed61142efa86cdf0170e417fde2f4c617
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
a9a8e9f773
|
gnu: r-oligoclasses: Disable tests.
* gnu/packages/bioconductor.scm (r-oligoclasses)[arguments]: Disable tests.
Change-Id: I0f8513449464a7fce0a353bcaf62b67bc58f31fe
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
38be84b4ff
|
gnu: r-oligoclasses: Add missing inputs.
* gnu/packages/bioconductor.scm (r-oligoclasses)[native-inputs]: Add
r-genomewidesnp6crlmm and r-human370v1ccrlmm.
Change-Id: I597e4fe28ec054376a8a4bbf2f87492d1a7bdce1
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
dc973bcc2c
|
gnu: Add r-human370v1ccrlmm.
* gnu/packages/bioconductor.scm (r-human370v1ccrlmm): New variable.
Change-Id: I46b8f5aa896fb1357cfe0329bbd6e25d7fd9db9c
|
2024-12-03 10:54:10 +01:00 |
|
Ricardo Wurmus
|
69b9c4e8df
|
gnu: Add r-genomewidesnp6crlmm.
* gnu/packages/bioconductor.scm (r-genomewidesnp6crlmm): New variable.
Change-Id: I6291cc56961076ecff1fba835e936036e7fdf35b
|
2024-12-03 10:54:10 +01:00 |
|