Ricardo Wurmus
|
63849ba3f0
|
gnu: Add r-lungcancerlines.
* gnu/packages/bioconductor.scm (r-lungcancerlines): New variable.
Change-Id: I4f688432cf3ec4361cd870ef12abef8678a5f665
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
a5c6cbfa04
|
gnu: r-millefy: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-millefy)[native-inputs]: Add r-testthat.
Change-Id: Id5d1f74074f05f1af2e3726e9a9e49f2d63f13c9
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
8be212d7ab
|
gnu: r-structuralvariantannotation: Add missing inputs.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation)
[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19 and r-tidyverse.
Change-Id: I2f91947e09b046f314faefc86bd2bbfdd7bf14de
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
63c0dfb1ae
|
gnu: r-annmap: Fix tests.
* gnu/packages/bioconductor.scm (r-annmap)[arguments]: Add phase 'set-HOME.
Change-Id: I0962b8da16f121bca7b5f1b619386447875dd108
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
165bc87cf5
|
gnu: r-chipcomp: Add missing inputs.
* gnu/packages/bioconductor.scm (r-chipcomp)[native-inputs]: Add r-biocstyle.
Change-Id: I7aeab9d0169480602286bce5f1374b70d2c50e75
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
151e80bc58
|
gnu: r-mutationalpatterns: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mutationalpatterns)[native-inputs]: Add
r-ccfindr.
Change-Id: I294c6c4d361c70c55e58509b2ff6512c24dd3978
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
fc34bab491
|
gnu: r-zonator: Add test inputs.
* gnu/packages/cran.scm (r-zonator)[native-inputs]: Add r-testthat.
Change-Id: I9cf262f2176b770d229fb0c7d9df217e9ab8a45c
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
f956b87c9b
|
gnu: Add r-ccfindr.
* gnu/packages/bioconductor.scm (r-ccfindr): New variable.
Change-Id: Icc76252494a1750888b8218df36ed002096c0268
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
bdfc8312a2
|
gnu: Add r-fmesher.
* gnu/packages/cran.scm (r-fmesher): New variable.
Change-Id: Ic9abf1b6ca383dba429366324b40877d4f51245a
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
faaa775ddb
|
gnu: r-abn: Add test inputs.
* gnu/packages/bioconductor.scm (r-abn)[arguments]: Add phase
'delete-bad-tests.
[native-inputs]: Add r-entropy, r-moments, and r-rhpcblasctl.
Change-Id: Id981a537882ecc620232049e6831de657ec7f29a
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
651a7580c9
|
gnu: r-singlet: Add test inputs.
* gnu/packages/bioinformatics.scm (r-singlet)[native-inputs]: Add r-testthat.
Change-Id: I617f6bbb9e11ef00148571b94a4aaf2d445cfcb2
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
58956c6d11
|
gnu: r-rapportools: Disable tests.
* gnu/packages/cran.scm (r-rapportools)[arguments]: Disable tests.
Change-Id: Ied42ce54bea57a36f4885b5e0093fe9d3b8da03e
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2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
845f7ef47e
|
gnu: r-zoon: Disable tests.
* gnu/packages/cran.scm (r-zoon)[arguments]: Disable tests.
Change-Id: I9d8c02c66fd95f1111914b02588f7841c2d46f39
|
2024-12-03 10:54:09 +01:00 |
|
Ricardo Wurmus
|
8fa6b9673f
|
gnu: r-kegggraph: Add test inputs.
* gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes.
[native-inputs]: Add r-hgu133plus2-db and r-rbgl.
Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
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2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
593a3e6c0b
|
gnu: r-assertive-reflection: Add test input.
* gnu/packages/cran.scm (r-assertive-reflection)[native-inputs]: Add
r-testthat.
Change-Id: Id9a1bb673fe1644336639d4365d2f55b7478e02e
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
830cbfa7dc
|
gnu: r-assertive-models: Add test input.
* gnu/packages/cran.scm (r-assertive-models)[native-inputs]: Add r-testthat.
Change-Id: Idaadd19423d2a42ee8c3765ea0d5643dba430565
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
d65ac00f74
|
gnu: r-assertive-matrices: Add test input.
* gnu/packages/cran.scm (r-assertive-matrices)[native-inputs]: Add r-testthat.
Change-Id: Ia91eee2a7c8597b32833f3245b31398c4c03b0d8
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
a92deafb31
|
gnu: r-assertive-sets: Add test input.
* gnu/packages/cran.scm (r-assertive-sets)[native-inputs]: Add r-testthat.
Change-Id: I701a52e5cc9508b84f57452c81fb00c635331a3e
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
2dafa0d2d5
|
gnu: r-assertive-numbers: Add test input.
* gnu/packages/cran.scm (r-assertive-numbers)[native-inputs]: Add r-testthat.
Change-Id: Ib76e20c5955e8e8da5bbad0740311032a28032f4
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
c4075db316
|
gnu: r-assertive-properties: Add test inputs.
* gnu/packages/cran.scm (r-assertive-properties)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: Idb11a7bfb85dc6f5a4e365149488dd1996e7d8a5
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
0fb322eebc
|
gnu: r-snprelate: Add test inputs.
* gnu/packages/bioconductor.scm (r-snprelate)[native-inputs]: Add
r-biocgenerics and r-matrix.
Change-Id: Ie0f58fc3a94622a316213bc6f50d2f1e30199f1a
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
1563f82d9b
|
gnu: r-gwastools: Disable tests.
* gnu/packages/bioconductor.scm (r-gwastools)[arguments]: Disable tests.
Change-Id: Ie5a0d07995d54c5824dde99cf3854e0c69aac2e8
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
c7df5415fe
|
gnu: r-affy: Disable tests.
* gnu/packages/bioconductor.scm (r-affy)[arguments]: Disable tests.
Change-Id: Iad8b990c573e417d611c3198110d6dc42deb5e2b
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
bc4a5c0018
|
gnu: r-seqarray: Add test inputs.
* gnu/packages/bioconductor.scm (r-seqarray)[native-inputs]: Add r-digest,
r-matrix, and r-variantannotation.
Change-Id: Iea288da4b74c575c28187353d8235700c5595c46
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
4b97e8e4b8
|
gnu: r-tarchetypes: Disable tests.
* gnu/packages/cran.scm (r-tarchetypes)[arguments]: Only build vignettes.
[native-inputs]: Add r-rmarkdown.
Change-Id: If5bf4054be61275995b54a60ac8b63182cd36aca
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
92fa8df992
|
gnu: r-ancombc: Add missing input.
* gnu/packages/bioconductor.scm (r-ancombc)[native-inputs]: Add r-microbiome.
Change-Id: I3ef087c262f71fbc5703aa798adc285c0db687af
|
2024-12-03 10:54:08 +01:00 |
|
Ricardo Wurmus
|
e0f22b9470
|
gnu: r-phyloseq: Add missing input.
* gnu/packages/bioconductor.scm (r-phyloseq)[native-inputs]: Add r-genefilter.
Change-Id: Iadc35d4721a69f37ba1370cc57e9320137c77738
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
5822e04f0c
|
gnu: r-bigpint: Disable tests.
* gnu/packages/bioconductor.scm (r-bigpint)[arguments]: Disable tests.
[native-inputs]: Add r-runit.
Change-Id: I755558ce65d00451586e35b2111bfd3de3890674
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
2109b5e81c
|
gnu: Add r-rtcga-rnaseq.
* gnu/packages/bioconductor.scm (r-rtcga-rnaseq): New variable.
Change-Id: I6e9287fe55da3f6db678603f115d790d273dacc2
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
49c0075061
|
gnu: r-rtcga: Disable tests.
* gnu/packages/bioconductor.scm (r-rtcga)[arguments]: Disable tests.
Change-Id: If33bac14355a89a1a75860d3f28216a0614a64b1
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
d20395cc50
|
gnu: r-biovizbase: Add missing input.
* gnu/packages/bioconductor.scm (r-biovizbase)[native-inputs]: Add
r-ensdb-hsapiens-v75.
Change-Id: I47b3e912af8af52f2168a111032662674327f86b
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
47a77af687
|
gnu: r-mediation: Skip vignettes.
* gnu/packages/cran.scm (r-mediation)[arguments]: Disable vignettes.
Change-Id: I7172f3822a57069ce14c1e3589056300d6497ce2
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
7276dc8e87
|
gnu: r-rms: Skip tests.
* gnu/packages/cran.scm (r-rms)[arguments]: Disable tests.
[native-inputs]: Add r-vgam.
Change-Id: Ia475863fc21cd4c8fdbcfc4f4a58eda3c086c99b
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
0f3733bc91
|
gnu: r-rliger: Add test inputs.
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase 'delete-bad-tests.
[native-inputs]: Add r-testthat.
Change-Id: I65efd90de0478532f5b322ce71c04bdc7461a84d
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
92171d189d
|
gnu: r-rliger: Add manifest file to JAR.
* gnu/packages/cran.scm (r-rliger)[arguments]: Generate MANIFEST.MF and
include it.
Change-Id: I676ff34d8f519a05995bd061ad77c7c6e1d90b39
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
71ddbc4784
|
gnu: r-pastecs: Add test input.
* gnu/packages/cran.scm (r-pastecs)[native-inputs]: Add r-svunit.
Change-Id: I8848a0c80b35e1fe8a37d9cc0f5aa33a09e21c99
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
db7255f220
|
gnu: Add r-svunit.
* gnu/packages/cran.scm (r-svunit): New variable.
Change-Id: I682f9068d242887d807086968f79f4b3828fba85
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
deb4667e67
|
gnu: r-triform: Add test input.
* gnu/packages/bioconductor.scm (r-triform)[native-inputs]: Add r-runit.
[arguments]: Skip building vignettes.
Change-Id: If9d7cddb5c24d9f82a653df7ca664b4d75059742
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
f3ff1c4e44
|
gnu: r-gdsfmt: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gdsfmt)[native-inputs]: Add
r-biocgenerics, r-digest, and r-matrix.
Change-Id: Ia0f08199a49f4b9c3b5ecf751fa8ec211140b12f
|
2024-12-03 10:54:07 +01:00 |
|
Ricardo Wurmus
|
29c7ded829
|
gnu: r-aroma-light: Add test input.
* gnu/packages/bioconductor.scm (r-aroma-light)[native-inputs]: Add
r-princurve.
Change-Id: I073ba49e5b564d1b6202a25e119b3d67f103c757
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
bb6d215f68
|
gnu: r-matrixtests: Add test inputs.
* gnu/packages/cran.scm (r-matrixtests)[native-inputs]: Add r-car, r-cosinor,
r-cosinor2, r-moments, r-nortest, and r-pmcmrplus.
Change-Id: I76a31fc34fa8cdaadfb56939f5d1a4de63c43262
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
d1ecc4aaa9
|
gnu: Add r-cosinor2.
* gnu/packages/cran.scm (r-cosinor2): New variable.
Change-Id: I4434c614c7e5fdcb33f97d9cb6100bd1bb962172
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
d5725fc02a
|
gnu: Add r-cosinor.
* gnu/packages/cran.scm (r-cosinor): New variable.
Change-Id: Iaecb697c68c51bfb0e1c9b184dee8bfb50c9ac33
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
2a7fcb45c6
|
gnu: r-anndatar: Add test inputs.
* gnu/packages/bioinformatics.scm (r-anndatar)[native-inputs]: Add r-rhdf5,
r-seuratobject, r-singlecellexperiment, and r-testthat.
Change-Id: I233a1f7216241b5d9d8301e07acdf811edb24a28
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
29b5471658
|
gnu: r-pander: Add missing inputs.
* gnu/packages/cran.scm (r-pander)[native-inputs]: Add
pandoc, r-lattice, and r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: Ib1c27b0883a153bc92334f2ad3928380f470d95a
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
f0b3b617fe
|
gnu: r-acde: Disable tests.
* gnu/packages/bioconductor.scm (r-acde)[arguments]: Disable tests.
[native-inputs]: Add r-biocgenerics.
Change-Id: I801951e942c80843bbdd6bc2eb63a31ddaf365a2
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
fc5a991847
|
gnu: r-chemmineob: Skip tests.
* gnu/packages/bioconductor.scm (r-chemmineob)[arguments]: Only build
vignettes.
Change-Id: I8dae82ac4226c33a18009131b7e17662af84589b
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
d9e4a816aa
|
gnu: r-chemminer: Add missing inputs.
* gnu/packages/bioconductor.scm (r-chemminer)[native-inputs]: Add
r-chemmineob, r-rsqlite, r-runit, and r-snow.
Change-Id: I625ae09918c3bdf9b7248e61c6d4959f67175f45
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
8de6c4af60
|
gnu: r-rcppml/devel: Add missing input.
* gnu/packages/machine-learning.scm (r-rcppml/devel)[native-inputs]: Add
r-testthat.
Change-Id: I6a5c29c82d2417d53684dbb278ce4b1703988ffa
|
2024-12-03 10:54:06 +01:00 |
|
Ricardo Wurmus
|
9f6ff92e78
|
gnu: r-rsvg: Add missing input.
* gnu/packages/cran.scm (r-rsvg)[native-inputs]: Add r-spelling.
Change-Id: Ie31fbf1a745acca112bda7e8432c02c3e9141c9f
|
2024-12-03 10:54:06 +01:00 |
|