Ricardo Wurmus
|
c4d7e1cd4f
|
gnu: r-monocle: Disable tests.
* gnu/packages/bioconductor.scm (r-monocle)[arguments]: Disable tests and add
phase 'patch-tests.
Change-Id: I430617a0edf56b977f882e9bd2b79dcb4a34542d
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
10296b8cae
|
gnu: r-doubletcollection: Add missing input and disable tests.
* gnu/packages/bioinformatics.scm (r-doubletcollection)[native-inputs]: Add
r-testthat.
[arguments]: Disable tests.
Change-Id: I8802f703ecfd8d69e6e457cffb28e34d3f4f2b06
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
7e64097a9d
|
gnu: r-gsva: Add missing input.
* gnu/packages/bioconductor.scm (r-gsva)[native-inputs]: Add r-gsvadata.
Change-Id: I81da88cbbef78885863fe199a5a4e51d67e0c0bf
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
1065128341
|
gnu: Add r-gsvadata.
* gnu/packages/bioconductor.scm (r-gsvadata): New variable.
Change-Id: Ic3bbcf3cff9b0f98597f143041b1b79298215e56
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
d509499eff
|
gnu: Add r-hgu95a-db.
* gnu/packages/bioconductor.scm (r-hgu95a-db): New variable.
Change-Id: I9eb2e8182689a2e1ba38c180d476dd60363f3c51
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
78db646a99
|
gnu: r-curatedtcgadata: Add missing input.
* gnu/packages/bioconductor.scm (r-curatedtcgadata)[native-inputs]: Add
r-testthat.
Change-Id: I9379295f854ab66a88321326c25f8d7a15fe2e26
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
bb939442b0
|
gnu: r-pando: Add missing inputs and disable tests.
* gnu/packages/bioinformatics.scm (r-pando)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg38, r-devtools, r-doparallel, and
r-ensdb-hsapiens-v86.
[arguments]: Disable tests.
Change-Id: Ic66679e2b8c4cdb9835ce08dc4dbb0a42e35e291
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
066b53965c
|
gnu: r-anpan: Add missing input.
* gnu/packages/bioinformatics.scm (r-anpan)[native-inputs]: Add r-testthat.
Change-Id: I69be3fa82db5f9c4e1302c9a3bd2d4f5253bde13
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
72895370c8
|
gnu: r-caretensemble: Add missing inputs.
* gnu/packages/cran.scm (r-caretensemble)[native-inputs]: Add r-catools,
r-earth, r-glmnet, r-mlbench, and r-randomforest.
Change-Id: I66037e22d86b1cadc5e57f84bfebb4e37396c705
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
494fcdd782
|
gnu: r-parsnip: Add missing input.
* gnu/packages/cran.scm (r-parsnip)[native-inputs]: Add r-earth.
[arguments]: Remove phase 'delete-bad-tests.
Change-Id: I64f4000afc59ab838476f6f08cc331f9121e802b
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
faec0f7595
|
gnu: Add r-earth.
* gnu/packages/cran.scm (r-earth): New variable.
Change-Id: If6ae39912cade13d0d81c1e5178eb20c5017ccb3
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
eeacb3d98a
|
gnu: r-openmx: Add missing input.
* gnu/packages/cran.scm (r-openmx)[native-inputs]: Add r-numderiv.
Change-Id: I7ed2872021b5f164d256704180076bf4618f5e8f
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
efed932ad9
|
gnu: Add r-plotmo.
* gnu/packages/cran.scm (r-plotmo): New variable.
Change-Id: Id0803e02acc72f1f98429f023b1d673453fde302
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
b0e687ae7d
|
gnu: r-kmer: Add missing input.
* gnu/packages/cran.scm (r-kmer)[native-inputs]: Add r-knitr.
Change-Id: Ia28f582637d27c87413af1169ae816ee05377652
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
b49b7e07ee
|
gnu: r-devtools: Add missing input.
* gnu/packages/statistics.scm (r-devtools)[native-inputs]: Add r-mockery.
Change-Id: I2d67a549e9eaee339b5362dac54d417deec850b9
|
2024-12-03 16:59:53 +01:00 |
|
Ricardo Wurmus
|
5a2ba07676
|
gnu: r-hdwgcna: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-hdwgcna)[native-inputs]: Add r-devtools
and r-testthat.
Change-Id: I553d4fc2f1a682e5d552862c5e50a31140528073
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
5ae3a6d466
|
gnu: r-rcmdcheck: Add missing inputs.
* gnu/packages/cran.scm (r-rcmdcheck)[native-inputs]: Add r-mockery and
r-webfakes.
Change-Id: Id4389d7c6d1c8bce5af67bcbf6d3e04956f58c9b
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
0f2aef7905
|
gnu: r-haplo-stats: Fix vignettes.
* gnu/packages/cran.scm (r-haplo-stats)[arguments]: Add phase 'set-HOME.
Change-Id: Ia1f5e5c33753b2261c7b4dc2ffa40322e9c840a9
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
1b3cc3e173
|
gnu: r-celldex: Disable tests.
* gnu/packages/bioconductor.scm (r-celldex)[arguments]: Disable tests.
Change-Id: I1881b1793f2fe8bc870697976a5c3434147760ca
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
4bd824791d
|
gnu: r-ihw: Add missing inputs.
* gnu/packages/bioconductor.scm (r-ihw)[native-inputs]: Add r-ggplot2 and
r-scales.
Change-Id: Ib52a30442b00ae4303d307a816578012563aa612
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
4b78a0dde4
|
gnu: r-ewastools: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-ewastools)[native-inputs]: Add r-enmix,
r-illuminahumanmethylationepicanno-ilm10b4-hg19, r-minfi, r-stringi, and
r-testthat.
Change-Id: I8ba2b1c46a4898b27874a7dc8648bb142f4b5a70
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
1117a49258
|
gnu: r-enmix: Add missing inputs.
* gnu/packages/bioconductor.scm (r-enmix)[native-inputs]: Add r-minfidata.
Change-Id: I0afa8a677c1b91ffec7463b2ed11aadd01a16797
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
e40daf6a10
|
gnu: r-untb: Add missing inputs and disable vignettes.
* gnu/packages/cran.scm (r-untb)[arguments]: Skip building vignettes.
[native-inputs]: Add r-vdiffr.
Change-Id: I0e3a8a075fd34f28cee1a76a443c215f500e5012
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
095516d897
|
gnu: r-dalex: Add test inputs.
* gnu/packages/cran.scm (r-dalex)[native-inputs]: Add r-gower and r-ranger.
Change-Id: I2a2de0275dff4a664fbfb660f7cbf065928dddc0
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
142a2953a3
|
gnu: r-minfi: Disable tests.
* gnu/packages/bioconductor.scm (r-minfi)[arguments]: Disable tests.
Change-Id: I6fdb8d78c176c2ebbfbd9289a00833b79448c7a2
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
387ca84d52
|
gnu: r-bamutils: Add test inputs and disable tests.
* gnu/packages/bioinformatics.scm (r-bamutils)[arguments]: Disable tests.
[native-inputs]: Add r-testthat and samtools.
Change-Id: I781c38fb59355a51f2cd27a833d7ed5dbe5277ab
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
bf20a8fb15
|
gnu: r-bamutils: Update to 0.0.0.9000-2.0a7d2d9.
* gnu/packages/bioinformatics.scm (r-bamutils): Update to
0.0.0.9000-2.0a7d2d9.
Change-Id: I04e86c2ff1059f23a34615ac6067926cdd9cb355
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
c39817a194
|
gnu: r-rbamtools: Disable tests.
* gnu/packages/cran.scm (r-rbamtools)[arguments]: Disable tests.
Change-Id: I6a16095454d3d58de23786bec21b54245dc5a462
|
2024-12-03 16:59:52 +01:00 |
|
Ricardo Wurmus
|
ec88f1db4e
|
gnu: r-chippeakanno: Add missing inputs.
* gnu/packages/bioconductor.scm (r-chippeakanno)[native-inputs]: Add
r-biomart, r-bsgenome-celegans-ucsc-ce10, r-bsgenome-drerio-ucsc-danrer7,
r-bsgenome-hsapiens-ucsc-hg19, r-ensdb-hsapiens-v79, r-org-ce-eg-db,
r-org-hs-eg-db, r-reactome-db, and r-txdb-hsapiens-ucsc-hg38-knowngene.
Change-Id: Ifd3e71dcca3297c03c9cc93da6c677a274c58b2c
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
0af4107d9f
|
gnu: r-arrow: Add missing input.
* gnu/packages/cran.scm (r-arrow)[native-inputs]: Add glibc-utf8-locales,
r-dplyr, r-hms, r-lubridate, r-stringr, r-tibble, and tzdata-for-tests.
[arguments]: Add phases 'delete-bad-tests, 'set-test-locale, and
'set-timezone.
Change-Id: Iece4e463ebe73d41a42594eff7850f2efa96b26f
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
527598ca24
|
gnu: r-annotatr: Disable tests.
* gnu/packages/bioconductor.scm (r-annotatr)[arguments]: Disable tests.
Change-Id: I819fe4bc651c39315ba6d42e34d36b505979003d
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
4860cad2d6
|
gnu: r-lpsymphony: Add missing input.
* gnu/packages/bioconductor.scm (r-lpsymphony)[native-inputs]: Add gfortran.
Change-Id: Id5bcbdb1bf19364fc8cbee905efb18698893f771
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
641d197db5
|
gnu: r-multiassayexperiment: Add missing inputs.
* gnu/packages/bioconductor.scm (r-multiassayexperiment)[native-inputs]: Add
r-hdf5array, r-raggedexperiment, and r-reshape2.
[arguments]: Add phase 'set-HOME.
Change-Id: Ifafc630ebd32cc255a4d7fd1c190a885e2f7020f
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
404ce6d28b
|
gnu: r-phylogram: Add missing input.
* gnu/packages/cran.scm (r-phylogram)[native-inputs]: Add r-knitr.
Change-Id: Ib2e4816c516cc5af9f9495c925e9e244453d30c9
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
6dfbabc8e9
|
gnu: r-dicekriging: Add missing inputs.
* gnu/packages/cran.scm (r-dicekriging)[native-inputs]: Add r-numderiv.
Change-Id: Ie5ac8b8e7d9c809ee06d26988c582d91d78fdfe6
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
8b01aff62e
|
gnu: r-mvnfast: Disable tests.
* gnu/packages/cran.scm (r-mvnfast)[arguments]: Disable tests.
Change-Id: I2c4ad28984200081faa328fbd606aff22c2bd0cb
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
f73d165d7a
|
gnu: r-janitor: Fix tests.
* gnu/packages/cran.scm (r-janitor)[native-inputs]: Add tzdata-for-tests.
[arguments]: Add phases 'set-timezone and 'delete-bad-tests.
Change-Id: Ibbea9ef585d6697e93c31d46b1ff7cc4e23e0e17
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
82c028588d
|
gnu: r-trajectoryutils: Add missing inputs.
* gnu/packages/bioconductor.scm (r-trajectoryutils)[native-inputs]: Add
r-biocneighbors and r-delayedmatrixstats.
Change-Id: Id49b6e481ebae657f40aba4692dda4de4e2d5bd1
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
915cf0626d
|
gnu: r-reinforcelearn: Add missing inputs.
* gnu/packages/cran.scm (r-reinforcelearn)[native-inputs]: Add r-knitr and
r-testthat.
Change-Id: I71965722253610030cce43e34d299891760cdc9f
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
e4a8fb8078
|
gnu: r-bigmemoryextras: Add missing input.
* gnu/packages/bioconductor.scm (r-bigmemoryextras)[native-inputs]: Add
r-testthat.
Change-Id: Iafc29855c30e74c055f157303e3c2f351f0e7aeb
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
5fc92ca9e3
|
gnu: r-leidenbase: Add missing inputs.
* gnu/packages/bioconductor.scm (r-leidenbase)[native-inputs]: Add r-knitr and
r-testthat.
Change-Id: I35e5aebbe6a5e44dea1743f011e4a3a362f6efb1
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
b32ddaa23a
|
gnu: r-spacyr: Fix tests.
* gnu/packages/cran.scm (r-spacyr)[argumenst]: Add phase 'set-HOME.
Change-Id: I990c80dd94388da09aa1592e3cc0dd8d14a65d94
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
9cb8676b35
|
gnu: r-quantmod: Disable tests.
* gnu/packages/cran.scm (r-quantmod)[arguments]: Disable tests.
Change-Id: If5ef32ec14ef1bfaca5f5ef983ad0b0e8971837b
|
2024-12-03 16:59:51 +01:00 |
|
Ricardo Wurmus
|
f64ef66be5
|
gnu: r-partitions: Skip vignettes.
* gnu/packages/cran.scm (r-partitions)[arguments]: Skip building vignettes.
Change-Id: I66d86a439d4ce0922dc74a86c3e4c53a0c632e07
|
2024-12-03 16:59:50 +01:00 |
|
Ricardo Wurmus
|
537f9642eb
|
gnu: r-nnlm: Add missing input.
* gnu/packages/statistics.scm (r-nnlm)[native-inputs]: Add r-testthat.
Change-Id: Id0acc0730f43e87d764b2938a299e3a0734358d5
|
2024-12-03 16:59:50 +01:00 |
|
Ricardo Wurmus
|
c6fb9d8a3f
|
gnu: r-arsenal: Add missing input.
* gnu/packages/cran.scm (r-arsenal)[native-inputs]: Add r-broom.
Change-Id: I442b99b481b73d401e178a69d593fa7a4566fe6a
|
2024-12-03 16:59:50 +01:00 |
|
Ricardo Wurmus
|
17869c79de
|
gnu: r-tester: Disable tests.
* gnu/packages/cran.scm (r-tester)[arguments]: Disable tests.
Change-Id: I85ffcd3735018e267d020df95c9ceeef05a18e30
|
2024-12-03 16:59:50 +01:00 |
|
Ricardo Wurmus
|
12e4ac2cca
|
gnu: r-tclust: Add missing inputs.
* gnu/packages/statistics.scm (r-tclust)[native-inputs]: Add r-cluster,
r-mclust, and r-sn.
Change-Id: I029d0fb895b24ecc796c76b93055e8203c7dfaae
|
2024-12-03 16:59:50 +01:00 |
|
Ricardo Wurmus
|
b25f44b636
|
gnu: r-illuminaio: Add missing inputs.
* gnu/packages/bioconductor.scm (r-illuminaio)[native-inputs]: Add r-biocstyle
and r-illuminadatatestfiles.
Change-Id: I2a0cea6faf2f67e2b851944e442a2a541328349a
|
2024-12-03 16:59:50 +01:00 |
|
Ricardo Wurmus
|
fefbe9d10b
|
gnu: Add r-illuminadatatestfiles.
* gnu/packages/bioconductor.scm (r-illuminadatatestfiles): New variable.
Change-Id: I6d1d3f342c8f6587557b18d5071d19e1e4e6aa28
|
2024-12-03 16:59:50 +01:00 |
|