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Author SHA1 Message Date
Ricardo Wurmus
823a12f446
gnu: python-ailment: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-ailment)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ie129cd325decbe1f67d641ec9c57b366a1371a34
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
014a135136
gnu: python-sparse: Update to 0.15.4. 
* gnu/packages/python-xyz.scm (python-sparse): Update to 0.15.4.
[arguments]: Add phase 'fix-version.
[native-inputs]: Remove python-importlib-metadata and python-pytest-black; add
python-pre-commit, python-setuptools-scm, and python-wheel.

Change-Id: I49d862186d0645e5a94ee8c6b33bb0578e2a4089
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
48cf798666
gnu: python-matplotx: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-matplotx)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I5b42c20e2b708d22738dafba74ec4fd641fb1e83
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
e403fabe58
gnu: datasette: Update to 1.0a16. 
* gnu/packages/databases.scm (datasette): Update to 1.0a16.
[arguments]: Enable almost all tests; remove phase 'relax-requirements.
[native-inputs]: Add nss-certs-for-test.

Change-Id: I0b23df8e3d2fadb007f1da21ee9a727228bde43c
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
4e1684de26
gnu: python-xdoctest: Update to 1.2.0. 
* gnu/packages/python-xyz.scm (python-xdoctest): Update to 1.2.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'pre-check phase.
[native-inputs]: Add cmake-minimal, ninja, pybind11, python-pytest-cov,
python-scikit-build, python-setuptools, and python-wheel.
[propagated-inputs]: Remove python-six.

Change-Id: Ia12eaa96751191efc2d6aa23ec460b3892cc6428
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
6716ad80fc
gnu: python-branca: Add missing inputs. 
* gnu/packages/python-web.scm (python-branca)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I77b68bb762dcb337cd6c776817ab66b88927cc20
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
9ff1b61240
gnu: python-swagger-spec-validator: Update to 3.0.4. 
* gnu/packages/python-xyz.scm (python-swagger-spec-validator): Update to
3.0.4.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Remove python-six; add python-importlib-resources and
python-typing-extensions.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ia6c311938afd7efd3be5d55f6c7d34a68c448c74
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
c9343281d9
gnu: python-clingexplaid: Add missing inputs. 
* gnu/packages/potassco.scm (python-clingexplaid)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I01a26c154adb4fb789b6595625389b73e09db3dd
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
13d1915ac8
gnu: python-httpauth: Add missing inputs. 
* gnu/packages/python-web.scm (python-httpauth)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ia130e05d4c694118bebcdd3db7180952a1dbbaca
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
fb1edef2f9
gnu: python-fastapi: Enable multipart tests. 
* gnu/packages/python-web.scm (python-fastapi)[arguments]: Do not ignore
multipart tests.

Change-Id: Ifb616700cf16f7eccb49f3d72a9cb5f98a62b2b3
 2025-01-16 10:17:34 +01:00
Ricardo Wurmus
082aef57ab
gnu: python-asgi-csrf: Update to 0.11. 
* gnu/packages/python-web.scm (python-asgi-csrf): Update to 0.11.
[arguments]: Remove.

Change-Id: I4814278b838f978d35a61fde8d3be9d6337d7eea
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
57df7589ef
gnu: python-multipart: Update to 0.0.20. 
* gnu/packages/python-xyz.scm (python-multipart): Update to 0.0.20.
[native-inputs]: Remove python-mock, python-setuptools, and python-wheel; add
python-hatchling.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.

Change-Id: If5400ee7e77ada5ad84fa06cf27f0190d55ad805
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
7ffcf4c50c
gnu: python-spectral-cube: Add missing input. 
* gnu/packages/astronomy.scm (python-spectral-cube)[native-inputs]: Add
python-wheel.

Change-Id: I7a5fa29cf8f72a4704fe4eed1f35494187d91c34
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
273b3edaa5
gnu: python-reproject: Add missing input. 
* gnu/packages/astronomy.scm (python-reproject)[native-inputs]: Add
python-wheel.

Change-Id: I412c9ae9278a32b017e19aa3698d9ce01f430103
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
522406d966
gnu: python-gwcs: Add missing input. 
* gnu/packages/astronomy.scm (python-gwcs)[native-inputs]: Add python-wheel.

Change-Id: Ie7355a4df6c5daf2ac5be567185f99a40b88eef5
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
7b7296c9dc
gnu: python-asdf-astropy: Add missing input. 
* gnu/packages/astronomy.scm (python-asdf-astropy)[native-inputs]: Add
python-wheel.
[arguments]: Remove obsolete phase 'relax-requirements.

Change-Id: Ia5f475073cf372697b4f8c6661930a3893810b37
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
9f91ffca14
gnu: python-astropy-minimal: Add missing input. 
* gnu/packages/astronomy.scm (python-astropy-minimal)[native-inputs]: Add
python-wheel.

Change-Id: Idf51791c864f90d5805d3c9afa633b34ff0f3ae3
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
28a96a54b2
gnu: python-regions: Add missing input. 
* gnu/packages/astronomy.scm (python-regions)[native-inputs]: Add
python-wheel.

Change-Id: I482877ec96fd96251ad633750572db721f0d7c37
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
47c94dbf7b
gnu: python-astropy-healpix: Add missing input. 
* gnu/packages/astronomy.scm (python-astropy-healpix)[native-inputs]: Add
python-wheel.

Change-Id: I16e53a22f402d853d1c1939db4b28a49af69e4c2
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
3dcb2f8427
gnu: python-asgi-csrf: Make compatibly with httpx 0.28.0+. 
* gnu/packages/python-web.scm (python-asgi-csrf)[arguments]: Add phase
'compatibility.

Change-Id: Ifa3604fd63e9045e3f060d6b57eeeab8afd182d3
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
cad2b068dc
gnu: python-mathics-pygments: Add missing inputs. 
* gnu/packages/maths.scm (python-mathics-pygments)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Iab1194635b8199cb681384d02f3a7dd25cbaac86
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
97b66aa79c
gnu: python-mathicsscript: Add missing inputs. 
* gnu/packages/maths.scm (python-mathicsscript)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Icb6f613afefe2074bc6e84cab2573474e74643bd
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
56aa3a00b2
gnu: python-metpy: Add missing inputs. 
* gnu/packages/geo.scm (python-metpy)[native-inputs]: Add python-setuptools
and python-wheel.

Change-Id: Iea093561b5ff4b9f7206de0ee82de36088c6d695
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
a96e3e0822
gnu: python-mathics-django: Add missing inputs. 
* gnu/packages/maths.scm (python-mathics-django)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I45522d75fed2492e5d2bb2d38cc430c84b2b2551
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
4116c5356d
gnu: python-columnize: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-columnize)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I16e4c74ad5c158e9e45c2b1f930f5abb72f7f203
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
e036aa93a0
gnu: python-term-background: Add missing input. 
* gnu/packages/python-xyz.scm (python-term-background)[native-inputs]: Remove
python-pkginfo; add python-wheel.

Change-Id: I9720aaad30294c532e9dcebd9247320e22e59866
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
42552ae0f7
gnu: scregseg: Patch for numpy compatibility. 
* gnu/packages/bioinformatics.scm (scregseg)[arguments]: Add phase
'compatibility.

Change-Id: I738d675c10acdbae7d40b3f806703ba8f7936a19
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
22b9dbbe7f
gnu: python-voila: Update to 0.5.8. 
* gnu/packages/jupyter.scm (python-voila): Update to 0.5.8.
[build-system]: Use pyproject-build-system.
[arguments]: Disable one test; remove phase 'relax-requirements; remove custom
'check phase; add phases 'prepare-css and 'install-extensions.
[native-inputs]: Add python-hatchling, python-hatch-jupyter-builder, and a
number of additional origins.

Change-Id: Id09a8cec5fedc77596315ffc662f0789a84e179a
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
f83ecd5742
gnu: python-episcanpy: Add missing input. 
* gnu/packages/bioinformatics.scm (python-episcanpy)[native-inputs]: Add
python-wheel.

Change-Id: Iba4ac520faf00e3db64df3532752b1de3eec1bc6
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
498bfad1a9
gnu: python-celltypist: Add missing input. 
* gnu/packages/bioinformatics.scm (python-celltypist)[native-inputs]: Add
python-wheel.

Change-Id: Ife136efe1d6f734951dde25e950148d3d7057d64
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
744404ddfb
gnu: python-metacells: Update to 0.9.5. 
* gnu/packages/bioinformatics.scm (python-metacells): Update to 0.9.5.
[native-inputs]: Add python-pandas-stubs and python-setuptools.

Change-Id: I25d28d0ebbb689c2561e25fec94cf4911c7f5158
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
a9b1814ec8
gnu: python-scanpy: Patch anndata version check. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Add phase
'patch-version-check.

Change-Id: I0d2262197ae05c785fc65bd22e8052764434cab3
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
7a640899a2
gnu: python-metacells: Add missing input. 
* gnu/packages/bioinformatics.scm (python-metacells)[native-inputs]: Add
python-wheel.

Change-Id: I5ca117071b43bad1942f499795001fe8bc641546
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
483bcd732f
gnu: python-fastcluster: Add missing inputs. 
* gnu/packages/python-science.scm (python-fastcluster)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I2fa034054f5183e04c2f1e673f841f07799a7b94
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
beb8a1da47
gnu: python-apscheduler: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-apscheduler)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I777d0c0d2c758d7ec3385a11432c3e9cc16877f1
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
74e04ab9fd
gnu: python-cvxpy: Add missing input. 
* gnu/packages/python-science.scm (python-cvxpy)[native-inputs]: Add
python-wheel.

Change-Id: I66f4f504a0a4101abc845b7b7d0a0fccbd6b91b9
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
6318f27f9c
gnu: python-scikit-survival: Add missing input. 
* gnu/packages/python-science.scm (python-scikit-survival)[native-inputs]: Add
python-setuptools.

Change-Id: I52e98c787cec226590f21c98e4287a41fb41f3d3
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
334707c78f
gnu: python-qdldl: Add missing input. 
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add
python-wheel.

Change-Id: I6bca560b20a9c259eae95c09edcf10ead685ec21
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
9afceff50e
gnu: python-osqp: Add missing inputs. 
* gnu/packages/python-science.scm (python-osqp)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ief43d97442a98935dea1499c67e022e9beb5359e
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
0d80ffd4dc
gnu: python-scikit-learn-extra: Disable one test. 
* gnu/packages/machine-learning.scm (python-scikit-learn-extra)
[arguments]: Disable one test.

Change-Id: Idee17402250a55ca564724f00550ef36664982f6
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
48131cec81
gnu: python-scikit-fuzzy: Add missing inputs. 
* gnu/packages/python-science.scm (python-scikit-fuzzy)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Idbaf5fa622b3584f8fd348ec0783605936d3bf41
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
a3657b1a98
gnu: python-scikit-allel: Update to 1.3.13. 
* gnu/packages/python-science.scm (python-scikit-allel): Update to 1.3.13.
[propagated-inputs]: Remove python-click.
[native-inputs]: Remove python-scipy.

Change-Id: I3c29bd3d9f87d0866da747c344740bad71cae1c3
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
aed3995e60
gnu: python-resolvelib: Update to 1.1.0b1. 
* gnu/packages/python-xyz.scm (python-resolvelib): Update to 1.1.0b1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ida8eb599bcfc02e84fc95ac276fba4ba217a6511
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
c5b8e1429d
gnu: python-resampy: Update to 0.4.3. 
* gnu/packages/audio.scm (python-resampy): Update to 0.4.3.
[arguments]: Remove.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I79d0a460d4646c5fde3aec9314d9ccc6380002de
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
5d2d250333
gnu: python-pytest-tornado5: Add missing inputs. 
* gnu/packages/check.scm (python-pytest-tornado5)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I0b64ac5f3e50893cb3fab518c9779d2cd7b9c6a9
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
31eb69204f
gnu: Remove python-pathlib. 
This package is obsolete, the module it provides is part of the standard
library, and the package has no users.

* gnu/packages/python-xyz.scm (python-pathlib): Remove variable.

Change-Id: I8c724ba7b62ad5602f6abdb4e5fdaf2806180ab5
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
8fba804af0
gnu: rust-jiter-0.2: Add missing input. 
* gnu/packages/crates-io.scm (rust-jiter-0.2)[native-inputs]: Add
python-minimal-wrapper.

Change-Id: Ieab1e0a1e3329528fc21a160669e7ea8376c0e5f
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
5a89243348
gnu: python-cachecontrol-0.11: Add missing inputs. 
* gnu/packages/python-web.scm (python-cachecontrol-0.11)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I02091636a09a92093af109b044614fe617a5dd4c
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
e83f4e980e
gnu: python-liana-py: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.4.0.
[arguments]: Adjust disabled tests.

Change-Id: I9245285e2d043b5e7cbce5fb95a30982cd981597
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
3b88afa1d9
gnu: python-mizani: Add missing input. 
* gnu/packages/python-xyz.scm (python-mizani)[native-inputs]: Add
python-wheel.

Change-Id: I9a1a7a4ee38db7a48e14069efb2b7b97dad32a80
 2025-01-16 10:17:29 +01:00