Commit graph

149957 commits

Author SHA1 Message Date
Janneke Nieuwenhuizen
7496ee8b1d
gnu: bdb-4.8: Fix build with gcc-14.
* gnu/packages/dbm.scm (bdb-4.8)[arguments]: Add CFLAGS to #:configure-flags
to relax gcc-14's strictness.

Change-Id: If016d18710acd525462f7f108939180650c73587
2025-01-01 16:19:14 +01:00
Janneke Nieuwenhuizen
f28ac925ec
gnu: jack-1: Fix build with gcc-14.
* gnu/packages/audio.scm (jack-1)[arguments]: Add CFLAGS to #:configure-flags
to relax gcc-14's strictness.

Change-Id: Id4506b072e7651991be54f119645d7842757ed0b
2025-01-01 16:19:14 +01:00
Janneke Nieuwenhuizen
c6e7595d44
gnu: cyrus-sasl: Fix build mwith gcc-14.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[arguments]: Add CFLAGS to #:configure-flags
to relax gcc-14's strictness.

Change-Id: Ib6afe50a3913ed38aad3eb673786b424307fc4a7
2025-01-01 16:19:14 +01:00
Janneke Nieuwenhuizen
1ac775392b
gnu: epson-inkjet-printer-escpr: Fix build with gcc-14.
* gnu/packages/cups.scm (epson-inkjet-printer-escpr)[arguments]: Add CFLAGS
to #:configure-flags to relax gcc-14's strictness.

Change-Id: I2333252701bc47adfef3da9f40b14c4dbda36abe
2025-01-01 16:19:14 +01:00
Janneke Nieuwenhuizen
0caafa0831
gnu: fontforge: Update to 20230101 and fix build with gettext-0.23.
* gnu/packages/fontutils.scm (fontforge): Update to 20230101.
[arguments]: Add stage "do-not-use-msgfmt--check".

Change-Id: I2e4e347e86a32963ac7b927be3bc9235dc326fd6
2025-01-01 16:19:14 +01:00
Janneke Nieuwenhuizen
42763d70e8
gnu: texlive-xdvi-bin: Fix build with gcc-14.
* gnu/packages/tex.scm (texlive-xdvi-bin): Add CFLAGS to #:configure-flags to
relax gcc-14's strictness.

Change-Id: Ia4f50c46911c4c4f97b8d9ba554db6f194a2c96e
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
20418c9add
gnu: zziplib: Update to 0.13.78; fixes build with gcc-14.
* gnu/packages/compression.scm (zziplib): Update to 0.13.78.

Change-Id: I5ea5999fe36696791543b11c2649ac06d07e7f26
2025-01-01 16:19:13 +01:00
Efraim Flashner
5d31a8d404
gnu: gcc-boot0: Fix building for aarch64-linux.
* gnu/packages/commencement.scm (gcc-boot0)[inputs]: When building for
aarch64-linux use libstdc++-boot0 from gcc-5.

Change-Id: I647694e70e461e100052801874f50c5c20b49398
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
659d001f92
gnu: localed: Fix build with gcc-14.
* gnu/packages/freedesktop.scm (localed)[arguments]: Add c_args to #:configure-flags
to relax gcc-14's strictness.

Change-Id: I2cb4d9bc7e22ab0bedacbd79b98d33a1b6a27bd0
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
0a8d25c2d1
gnu: serf: Update to 1.3.10 and fix build with gcc-14.
* gnu/packages/patches/serf-python3.patch: Remove file.N
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/web.scm (serf): Update to 1.3.10 and remove it.
[arguments]: Add CFLAGS to #:scons-flags to relax gcc-14's strictness.

Change-Id: I2cb4d9bc7e22ab0bedacbd79b98d33a1b6a27bd0
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
8e89e530e2
gnu: libxaw3d: Update to 1.6.6, fixes build with gcc-14.
* gnu/packages/xorg.scm (libxaw3d): Update to 1.6.6.  Fixes build withg gcc-14.

Change-Id: Iaca9089f3d88e32086d013e799db48469d4374ab
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
7aefe4ef9d
gnu: hplip: Update to 3.24.4 and fix build with gcc-14.
* gnu/packages/cups.scm (hplip): Update to 3.24.4.
[arguments]: Add "set-gcc-14-cflags" phase to relax gcc-14's strictness.

Change-Id: Ie753c9ebb51f08c4683e9a9762e9c269eceb5e22
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
ebef0e269b
gnu: llvm-13: Fix build with gcc-14.
* gnu/packages/patches/llvm-13-gcc-14.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/llvm.scm (llvm-13): Use it.

Change-Id: I3b9d3b894b0ae6ffe375d3e22f4f4a07d81a77c5
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
d69bcd7aa1
gnu: nlohmann-json: Update to 3.11.3; fixes build with gcc-14.
* gnu/packages/cpp.scm (nlohmann-json): Up.date to 3.11.33.  This fixes the
build with gcc-14.

Change-Id: I49248356cddd3ed750e0768f9c5cd5abbe184121
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
2f48a96512
gnu: cmake-bootstrap: Fix build with gcc-14.
Apparently cmake-minimal cannot be updated because of the introducion of a
circular cppdap dependency.

* gnu/packages/cmake.scm (%common-disabled-tests): Add failing "LoadCommand"
and "LoadedCommandOneConfig" tests.

Change-Id: Ic71aa92c327f7853248748d6eab4db9309c90408
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
90f71bb08a
gnu: xmlto: Fix build with gcc-14.
* gnu/packages/xml.scm (xmlto)[arguments]: Add CFLAGS to #:configure-flags
to relax gcc-14's strictness.

Change-Id: I4eb5c18dede03f197aebb6d99c61e1cee307b471
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
ef1bb7fc16
gnu: python-lxml: Update to 5.2.2; fixes build with gcc-14.
* gnu/packages/xml.scm (python-lxml): Update to 5.2.2.  This fixes the build
with gcc-14.

Change-Id: Ia14c5266f157ed373d4d0129cc4623a09f22bb75
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
f4735107ac
gnu: go-1.21.5: Skip test failing with gcc-14.
* gnu/packages/golang.scm (go-1.21)[arguments]: Add "remove-failing-test" phase.

Change-Id: Ie12c23c41f82e752cad8b4f7f2689628f05670af
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
74ca5a7dda
gnu: guile-lzlib: Fix build with gcc-14.
* gnu/packages/patches/guile-lzlib-gcc-14.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile.scm (guile-lzlib)["source"]: Use it, together with
"guile-lzlib-hurd64.patch".
[arguments]: Remove "apply-hurd64-patch" phase.

Change-Id: Iecc42bfd192c21b08b56c144e4dc95bb5ebc875c
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
35ca3b9245
gnu: expect: Fix build with gcc-14.
* gnu/packages/tcl.scm (expect)[arguments]: Add CFLAGS to #:configure-flags to
relax gcc-14's strictness.

Change-Id: Ic371619c87cac9a047fdee6eded21611bc23bd1b
2025-01-01 16:19:13 +01:00
Janneke Nieuwenhuizen
22bbee073b
gnu: torsocks: Fix build with gcc-14.
* gnu/packages/tor.scm (torsocks)[arguments]: Use G-Expressions.  Add
CFLAGS to #:configure-flags to relax gcc-14's strictness.

Change-Id: I57a955a49665cd37208d5760a8d4c745d15c866b
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
8c8575afa2
gnu: libstdc++: Fix build for x86-linux with gcc-14.
* gnu/packages/gcc.scm (make-libstdc++)[arguments]: When building with gcc-14
for x86-linux, add stage patch-x86_64-linux.

Change-Id: Icaf0a31744dc6102d96444f531f3ba1878a61b6c
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
c7f5d29fe2
gnu: elfutils: Update to 0.192; fixes build with gcc-14.
Version 0.187 does not compile with gcc-14: -Werror=stringop-overflow.

* gnu/packages/elf.scm (elfutils): Update to 0.192.  This fixes the build with
gcc-14.

Change-Id: I9e31f24c1e62c45390789072b52dfc10d90581fe
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
a66e6229a8
gnu: bdb: Use automake-1.16.5.
This avoids
    aclocal/types.m4:7: warning: underquoted definition of AM_SEARCH_USIZES

and its consequent error.

* gnu/packages/dbm.scm (bdb-4.8)[native-inputs]: Use automake-1.16.5.

Change-Id: I0f415f230198604297531499f37524b140543b9e
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
648ede2beb
gnu: automake-1.16.5: Skip tests.
As 23 compiler "tap" tests fail that cannot be easily skipped, disable tests
altogether.

    ERROR: t/depcomp-auto
    =====================

    ERROR: t/depcomp-auto.tap - missing test plan
    ERROR: t/depcomp-auto.tap - exited with status 77

    ERROR: t/depcomp-cpp
    ====================

    ERROR: t/depcomp-cpp.tap - missing test plan
    ERROR: t/depcomp-cpp.tap - exited with status 77

    ERROR: t/depcomp-dashmstdout
    ============================

    ERROR: t/depcomp-dashmstdout.tap - missing test plan
    ERROR: t/depcomp-dashmstdout.tap - exited with status 77

    ERROR: t/depcomp-gcc
    ====================

    ERROR: t/depcomp-gcc.tap - missing test plan
    ERROR: t/depcomp-gcc.tap - exited with status 77

* gnu/packages/autotools.scm (automake)[arguments]: Skip tests.  Remove
"skip-test" phase, as the "tap" tests ERROR out when skipped.
(automake)[arguments]: Enable tests.  Add, instead of replace, "skip-tests" phase.

Change-Id: Iacc2ca3bc84f0a4b261663b9178922bcb1c18578
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
c3b3a6442f
gnu: Re-Add automake-1.16.5.
* gnu/packages/autotools.scm (automake): Rename to...
(automake-1.16.5): ...this, and downgrade version to 1.16.5.
[arguments]: Rename phase "skip-test" to "skip-tests", skip 8 more tests
that fail with gcc-14.
[source]:  Move to...
(automake): ...this new variable.
[arguments]: Replace "skip-tests" phase.

Change-Id: Iacc2ca3bc84f0a4b261663b9178922bcb1c18578
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
143ec73ecb
gnu: automake: Update to 1.17; fixes build with gcc-14.
* gnu/packages/autotools.scm (automake): Update to 1.17.  This fixes the build
with gcc-14.
[arguments]: Rembove custom #:configure-flags.

Change-Id: Iedddebb6245c85f7a7c532594e6bc0fd9b151584
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
380e83491c
gnu: automake: Fix build with gcc-14.
* gnu/packages/autotools.scm (automake)[arguments]: Add
"CC=-Wno-implicit-function-declaration" to #:configure-flags.

Change-Id: Ie3318f9717beb9871887fa01a53c4b999e917275
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
f66b6a0f70
gnu: unzip: Fix build with gcc-14.
* gnu/packages/compression.scm (unzip)[arguments]: Add CC to #:make-flags to
relax gcc-14's strictness.  In phase "build" use target "generic" rather than
"generic_gcc".

Change-Id: I9b4753529b15b5766d7764553bf1fb234c437d45
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
1047ae5042
gnu: gettext: Update to 0.23.
* gnu/packages/patches/gettext-libunicode-update.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister.
* gnu/packages/gettext.scm (gettext-minimal): Update to 0.23.
[source]: Remove patch.
[arguments]: In phase "patch-tests", skip gnulib test "test-execute.sh".

Change-Id: Ibac01c139e135c3a9c13f9077b4fbc6a7db93207
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
07d2efc4fa
gnu: gettext: Fix build with gcc-14.
* gnu/packages/gettext.scm (gettext-minimal) [arguments]: In phase
"patch-tests", skip failing "xgettext-javascript-6" test.

Change-Id: Ibac01c139e135c3a9c13f9077b4fbc6a7db93207
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
256c8ffe50
gnu: zip: Fix build with gcc-14.
* gnu/packages/compression.scm (zip)[arguments]: Add CC to #:make-flags to
relax gcc-14's strictness.  In phase "build" use target "generic" rather than
"generic_gcc".

Change-Id: I21af1acdc550c83e63241811a6586598f187b2ef
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
1eaeae0af9
gnu: libffi: Update to 3.4.6; fixes build with gcc-14.
* gnu/packages/libffi.scm (libffi): Update to 3.4.6.
[arguments]: Remove CFLAGS hack.

Change-Id: I1d9ea6094e42d154f6fa17b47106e066b32d9ca2
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
6aac8c1c77
gnu: libffi: Fix build for x86_64-linux with gcc-14.
* gnu/packages/libffi.scm (libffi) [arguments]: When building for
x86_64-linux, also use "CFLAGS=-g -O2 -Wno-implicit-function-declaration".

Change-Id: I21af1acdc550c83e63241811a6586598f187b2ef
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
e01bf1d99d
gnu: commencement: gcc-final: Fix build for x86-linux with gcc-14.
Summary: Use fixes for the 64bit Hurd also on linux.

* gnu/packages/commencement.scm (gcc-final)[arguments]: When building for
x86-linux, create a gcc wrapper in phase "create-stage-wrapper", use it by
adding STAGE_CC_WRAPPER to #:make-flags, and CC to #:configure-flags to
convince configure gmp that gcc and g++ work.
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
d812f8a61d
gnu: bash-minimal: Fix build for x86-linux with gcc-14.
* gnu/packages/bash-minimal.scm (bash)[arguments]: When building
for x86-linux, also use CFLAGS in #:configure-flags to relax gcc-14's strictness.

Change-Id: I21af1acdc550c83e63241811a6586598f187b2ef
2025-01-01 16:19:11 +01:00
Efraim Flashner
2580888488
gnu: gcc-boot0: Fix building on powerpc64le-linux.
* gnu/packages/commencement.scm (gcc-boot0)[inputs]: When building for
powerpc64le-linux use libstdc++-boot0 from gcc-5.

Change-Id: I21df5ba91dcff9f6b83977996ef2d15306ab6ca9
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
0cc602d749
gnu: commencement: gcc-boot0: Fix build for x86-linux with gcc-14.
* gnu/packages/commencement.scm (gcc-boot0)[arguments]: When building for
x86-linux, add phase "patch-system.h" to substitute fix SIZE_MAX macro.

Change-Id: I6e552aaa458755ec920873a0535f599c88a1f74f
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
1a6bbf1fd4
Revert "Partial revert "gnu: make-bootstrap: Update gcc-static to gcc-14, for the 64bit Hurd.""
This cleanup was reverted because it led to a world rebuild.

This reverts commit 7b64a96326.

Change-Id: Ieefd576c365527267c04ee64292c15e9702d5254
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
6a75866d36
Revert "Partial revert "gnu: bootstrap: %bootstrap-glibc: Also fix libm.so.""
This cleanup was reverted because it led to a world rebuild.

This reverts commit 126a2e8cb4.

Change-Id: I5c862602c3722c787e0ed6deac55920007411fd5
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
da635fc42d
Revert "Partial revert "gnu: bootstrap: %bootstrap-gcc: Also wrap g++ for the 64bit Hurd.""
This cleanup was reverted because it led to a world rebuild.

This reverts commit 006679d1e6.

Change-Id: Id14fcc35fb8d550644b4d6cebace110ae0bab59e
2025-01-01 16:19:11 +01:00
Ricardo Wurmus
34a279e0da
gnu: python-hicmatrix: Work around defect in python-tables.
* gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2.
[arguments]: Add phase 'find-blosc2.

Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
2025-01-01 15:29:14 +01:00
Ricardo Wurmus
4b38f39022
gnu: jupyter: Skip sanity check.
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (jupyter)[arguments]: Delete 'sanity-check
phase.

Change-Id: I715d9161d7f23c1f72125aea8b4c0e1bb5490b1e
2025-01-01 15:14:55 +01:00
Ricardo Wurmus
a39c4b7e38
gnu: python-notebook: Skip sanity check.
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (python-notebook)[arguments]: Delete
'sanity-check phase.

Change-Id: I23d69c852fd9de98c010cce82b09ac541c0e2121
2025-01-01 15:14:34 +01:00
Ricardo Wurmus
cbc6fa9800
gnu: python-nbclassic: Skip sanity check.
This is temporary and will be removed on the python-team branch.

* gnu/packages/jupyter.scm (python-nbclassic)[arguments]: Delete 'sanity-check
phase.

Change-Id: I8a3190a849d192d9c7f1b2e903b55705622671f8
2025-01-01 15:00:28 +01:00
Ricardo Wurmus
44e7540663
gnu: python-zarr: Update to 2.18.4.
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.18.4.
[arguments]: Add phase 'set-version.
[propagated-inputs]: Add python-ipywidgets, python-notebook, python-numpydoc,
and python-pydata-sphinx-theme.
[native-inputs]: Remove python-fsspec, python-h5py, python-pytest-timeout, and
python-setuptools-scm; add python-sphinx, python-sphinx-copybutton,
python-sphinx-design, python-sphinx-issues, and python-setuptools.

Change-Id: I707da0087b8aa6cf57be4e5dd9019b24620f101f
2025-01-01 14:43:04 +01:00
Ricardo Wurmus
f492431b40
gnu: python-awkward: Update to 2.7.2.
* gnu/packages/python-xyz.scm (python-awkward): Update to 2.7.2.
[arguments]: Skip three broken tests.

Change-Id: Ifdfcda9c57b9b27e9c3b5e0b05c7896d552b30cd
2025-01-01 14:36:36 +01:00
Ricardo Wurmus
f2ef1fdcc1
gnu: python-awkward-cpp: Update to 43.
* gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 43.
[propagated-inputs]: Remove python-importlib-resources.

Change-Id: I7201a31d49287f9a656f53fff953ebb593620712
2025-01-01 14:36:26 +01:00
Ricardo Wurmus
6b692fc0f9
gnu: python-pybedtools: Update to 0.10.0.
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.10.0.
[arguments]: Use #:test-flags to disable one test instead of patching test
files in 'disable-broken-tests phase; add new phases 'fix-references and
'build-extensions.
[propagated-inputs]: Remove python-matplotlib; add kentutils, python-numpy,
python-pandas, and python-psutil.
[inputs]: Add zlib.
[native-inputs]: Remove python-numpy, python-pandas, python-psutil,
python-six, and kentutils.

Change-Id: I62948b1f3169f93f752896fdf02d2887740e98cc
2025-01-01 14:13:34 +01:00
Ricardo Wurmus
3c31650d18
gnu: python-upsetplot: Add missing inputs.
* gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
2025-01-01 14:11:52 +01:00