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Author SHA1 Message Date
Maxim Cournoyer
3fa68819a2
Revert "gnu: Add vv." 
This reverts commit fc27362f8d.  This broke
'guix pull'.
 2025-01-21 14:41:50 +09:00
Danny Milosavljevic
fc27362f8d
gnu: Add vv. 
* gnu/packages/image-viewers.scm (vv): New variable.

Change-Id: I0f0b4eb220993b5d10583793c9754aa089918248
 2025-01-21 02:24:07 +01:00
Danny Milosavljevic
5d46903b4c
gnu: Add aklomp-base64. 
* gnu/packages/cpp.scm (aklomp-base64): New variable.

Change-Id: I95d1e254abf190c526ac06c2a52ebc3b656dee45
 2025-01-20 22:19:35 +01:00
Danny Milosavljevic
ff87f8aeee
gnu: libjxl: Update to 0.10.4. 
* gnu/packages/image.scm (libjxl-0.10): New variable.

Change-Id: Ie74cefe214e5587fc250b6595fb109ea7b7008c0
 2025-01-20 22:18:45 +01:00
Danny Milosavljevic
395c0af00e
gnu: openexr: Add imath dependency. 
* gnu/packages/gnu/packages/graphics.scm (openexr)[propagated-inputs]: Add
imath.

Change-Id: I9e096f866d71f41402e86c782651eb10bbfa32f1
 2025-01-20 22:18:45 +01:00
Danny Milosavljevic
e5aa06223c
gnu: stb: Update to 2e2bef463a5b53ddf8bb788e25da6b8506314c08. 
* gnu/packages/stb.scm (stb):  Update to
2e2bef463a5b53ddf8bb788e25da6b8506314c08.
[arguments<#:phases>[check]: Disable.
(stb-image):  Update to 2.30.
(stb-image-resize):  Remove variable.
(stb-image-resize2):  New variable.
(stb-image-write):  Update to 1.16.
(stb-rect-pack):  Update to 1.01.
(stb-printf):  Update to 1.10.
(stb-truetype):  Update to 1.26.

Change-Id: I664c1d557d99b6495f7b4797df991710003321cb
 2025-01-20 22:18:38 +01:00
Navid Afkhami
0d54c97bc3
gnu: Add r-deoptim. 
* gnu/packages/cran.scm (r-deoptim): New variable.

Change-Id: I0db4f2aa6707ffa99c2e57f616689dcd3a296236
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2025-01-20 22:06:56 +01:00
Sharlatan Hellseher
69d657f9c4
gnu: python-orange-widget-base: Update to 4.25.1. 
* gnu/packages/orange.scm (python-orange-widget-base): Update to
4.25.1. Use G-Expressions, fix build.
[srouce]: Adjust URI as PyPI archive name has been changed.
[build-system]: Swap to pyproject-build-system.
[arguments] <tests?>: Enable them.
<test-flags>: Skipp 3 failing tests.
<phases>: Remove 'check-setup, add 'pre-check.
[native-inputs]: Add python-pytest, python-setuptools, python-trubar,
and python-wheel.

Change-Id: I20db769c92ec67263984c79ee77e430fd35712ae
 2025-01-20 21:38:05 +01:00
Sharlatan Hellseher
ad595936b6
gnu: python-orange-canvas-core: Update to 0.2.5. 
* gnu/packages/orange.scm: Add (guix gexp), (guix build-system
pyproject), and (gnu packages check). Sort modules alphabetically.
(python-orange-canvas-core): Update to 0.2.5. Use G-Expressions and fix
build.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Skip 3 tests.
<phases>: Remove 'check-setup, add 'pre-check and
'relax-requirements.
[propagated-inputs]: Add python-numpy, python-requests-cache, and
python-typing-extensions.
[native-inputs]: Add python-pytest, python-setuptools, python-trubar,
and python-wheel.

Change-Id: If504e1d6c01b4235d562991a5551c698dd6deb39
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
b8f72c8a2b
gnu: Add python-requests-cache. 
* gnu/packages/python-web.scm (python-requests-cache): New variable.

Change-Id: I790b509e88529ce85c6f46240064ceb88aff35ce
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
746590357d
gnu: Add python-url-normalize. 
* gnu/packages/python-web.scm (python-url-normalize): New variable.

Change-Id: Ic86b7d27451ef994b980efc1fb7faa2a813f4e0a
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
94eca566b0
gnu: Add python-trubar. 
* gnu/packages/python-xyz.scm (python-trubar): New variable.

Change-Id: I684fc614862cbfd3ac8edaaf68e66ea2a8ec237b
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
3e4f27f54c
gnu: python-libcst: Update to 0.3.18. 
* gnu/packages/python-xyz.scm (python-libcst): Update to 0.3.18. Use
G-Expressions, improve style and fix build.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Move skip test logic here instead of deleting
test files.
<phases>: Remove 'generate-test-data. Use default 'check.
[native-inputs]: Remove python-black and python-isort; add
python-pytest, python-setuptools, and python-wheel.
(python-libcst-minimal) [native-inputs]: Add python-setuptools and
python-wheel.

Change-Id: Ia3e85d17d02a8ea1dd7bc0b2a9062d46b11d6651
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
8a490d8b7c
gnu: python-libneuroml: Update to 0.6.5. 
* gnu/packages/python-science.scm (python-libneuroml): Update to 0.6.5.
Fix build.
[propagated-inputs]: Remove python-six; add python-natsort and
python-networkx.

Change-Id: I750f90cebdeba46286239b18569300a2e4ce8c80
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
cf6d9f5d87
gnu: python-asprin: Add missing inputs. 
* gnu/packages/potassco.scm (python-asprin) [native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I1c61ff4c431202a2627b704a4d73d56922c61bb8
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
e7b7ec2851
gnu: python-eventlet: Move to python-web. 
* gnu/packages/python-xyz.scm (python-eventlet): Move from here ...
* gnu/packages/python-web.scm: ... to here.

Change-Id: I71beee927f17133267bf0236f075bccf15effe0e
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
a3a7cf9579
gnu: python-eventlet: Adjust inputs. 
* gnu/packages/python-xyz.scm (python-eventlet) [native-inputs]: Remove
python-black, python-isort, and python-pre-commit.

Change-Id: Id0671cf1ec87f2c44a5b1bd915efae594c17804e
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
3ce9151a03
gnu: python-typing-inspect: Update to 0.9.0. 
* gnu/packages/python-xyz.scm (python-typing-inspect): Update to 0.9.0.
[source]: Remove patch, as
<https://github.com/ilevkivskyi/typing_inspect/issues/60> was resolved.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

* gnu/packages/patches/python-typing-inspect-fix.patch: Delete file.
* gnu/local.mk: Deregester the patch.

Change-Id: Idc6e8745d4b85624863a5c2dc24e533a7dd92f46
 2025-01-20 21:38:04 +01:00
Sharlatan Hellseher
100efdbd7a
gnu: python-testpath: Update to 0.6.0. 
* gnu/packages/check.scm (python-testpath): Update to 0.6.0.
[build-system]: Swap to pyproject-build-system.
[arguments] <phases>: Remove 'relax-requirements. Use default 'build,
'check and 'install.
[native-inputs]: Remove python-pypa-build.

Change-Id: I510407b86a938151c20272bb8396529823f3fb48
 2025-01-20 21:38:03 +01:00
Sharlatan Hellseher
230740b032
gnu: python-miio: Migrate to pyproject-build-system. 
* gnu/packages/android.scm (python-miio)
[build-system]: Swap to pyproject-build-system.
[arguments] <phases>: Remove 'relax-requirements. Use default 'check.
[native-inputs]: Remove python-sphinx; add python-poetry-core.

Change-Id: I0749f313d23e55bac0174a9ccd38aa92ac6eb26d
 2025-01-20 21:38:03 +01:00
Sharlatan Hellseher
51d8ae3af6
gnu: python-sphinxcontrib-apidoc: Update to 0.5.0. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-apidoc): Update to 0.5.0.
[build-system]: Swap to pyproejct-build-system.
[arguments] <tests?>: Enable them.
[propagated-inputs]: Add python-pbr and python-sphinx.
[native-inputs]: Remove python-pbr, python-sphinx, and
python-testrepository; add python-setuptools and python-wheel.

Change-Id: I6daa8a2bf1deaf71c57bcc712e22ef85724ad0b5
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
4ea986c35c
gnu: python-modin: Update to 0.32.0. 
* gnu/packages/python-science.scm (python-modin): Update to 0.32.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove phase 'make-files-writable; disable one test; update
custom 'check phase.
[propagated-inputs]: Add python-s3fs.
[native-inputs]: Add python-boto3 and python-wheel.

Change-Id: I1d74013902e3387945586192b88c1e4fd8256733
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
d8c294e880
gnu: python-pynetdicom: Update to 2.1.1. 
* gnu/packages/python-science.scm (python-pynetdicom): Update to 2.1.1.
[native-inputs]: Add python-codespell, python-coverage, python-poetry-core,
python-pytest-cov, python-pytest-xdist, python-sphinx, and
python-sphinx-rtd-theme; remove python-pyfakefs, python-setuptools, and
python-wheel.
[propagated-inputs]: Add python-mypy, python-numpydoc, and python-pyfakefs.

Change-Id: Ic0089df89cd34b50c31370581db7a6e88884199c
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
5580976333
gnu: python-asyncua: Update to 1.1.5. 
* gnu/packages/engineering.scm (python-asyncua): Update to 1.1.5.
[native-inputs]: Replace python-pytest-asyncio with
python-pytest-asyncio-0.21.
[propagated-inputs]: Add python-pyopenssl and python-typing-extensions.

Change-Id: Ic28b84b420d46f4e38c5f1713a7d295355d224a0
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
1e490f2eb1
gnu: Add python-pytest-asyncio-0.21. 
* gnu/packages/check.scm (python-pytest-asyncio-0.21): New variable.

Change-Id: I00a1c54acbe774965be013462906d4616252dc99
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
6c372c2122
gnu: python-wand: Disable two failing tests. 
* gnu/packages/python-xyz.scm (python-wand)[arguments]: Disable two tests.

Change-Id: I6739af9c167ba6e827c7660caaa3fd64de574a8f
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
da259387c3
gnu: r-trackviewer: Fix reference. 
* gnu/packages/bioconductor.scm (r-trackviewer)[arguments]: Use correct label
for reference to origin.

Change-Id: I6c66ab468e19025ee9e912a531c8e6ca458e750b
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
332a7bb631
gnu: r-motifstack: Fix reference. 
* gnu/packages/bioconductor.scm (r-motifstack)[arguments]: Use correct label
for reference to origin.

Change-Id: Ia9b3222f15c9630bd703713111e79937126e20fd
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
105f58850b
gnu: r-reportingtools: Fix reference. 
* gnu/packages/bioconductor.scm (r-reportingtools)[arguments]: Use correct
label for reference to origin.

Change-Id: Id3b509c369bd35e12fff2fb2f4822bef4152aff1
 2025-01-20 21:38:03 +01:00
Ricardo Wurmus
325e3e272d
gnu: r-radiant-data: Fix reference. 
* gnu/packages/cran.scm (r-radiant-data)[arguments]: Use correct label for
reference to origin.

Change-Id: I5486e99fcca41f4d6968f4f95009159ffc66c05b
 2025-01-20 21:38:02 +01:00
Sharlatan Hellseher
85fb1c6f1d
gnu: python-django-haystack: Enable tests. 
* gnu/packages/django.scm (python-django-haystack): Use G-Expressions.
[arguments] <phases>: Use custom 'check. Remove 'set-gdal-lib-path
having it makes all tests to fail.
[inputs]: Remove gdal.

Change-Id: Ic7b70f731cd805b2aedfc94fe9a13cb37c7ff930
 2025-01-20 21:38:02 +01:00
Sharlatan Hellseher
69bf202d36
gnu: python-geopy: Update to 2.4.1. 
* gnu/packages/geo.scm (python-geopy): Update to 2.4.1.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Skip tests requiring Internet.
[native-inputs]: Remove python-async-generator, python-coverage,
python-flake8, python-isort, python-pytest-aiohttp, and
python-readme-renderer; add python-docutils, python-pytest-asyncio,
python-setuptools, and python-wheel.

Change-Id: I051f6b9a98e6adb0e72dd3e57a73ee66c5df4b86
 2025-01-20 21:38:02 +01:00
Sharlatan Hellseher
718c917ca8
gnu: python-geographiclib: Update to 2.0. 
* gnu/packages/geo.scm (python-geographiclib): Update to 2.0.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: I066cecab0a6934a5f18867b248b97d7a193c1d36
 2025-01-20 21:38:02 +01:00
Ricardo Wurmus
9966826c85
gnu: python-pandas-vet: Update to 2023.8.2. 
* gnu/packages/python-check.scm (python-pandas-vet): Update to 2023.8.2.
[arguments]: Add phase 'set-version.
[native-inputs]: Add python-hatchling and python-pytest-cov.

Change-Id: I2b6352ba70b8862a1103983a0574ab4d635942ab
 2025-01-20 21:38:02 +01:00
Ricardo Wurmus
e253d60eba
gnu: python-bigfloat: Fix build. 
* gnu/packages/python-xyz.scm (python-bigfloat)[source]: Add snippet to delete
generated file.
[build-system]: Use pyproject-build-system.
[arguments]: Disable one test; add phase 'cythonize.
[native-inputs]: Add python-cython, python-pytest, python-setuptools, and
python-wheel.

Change-Id: If535051bbe7f223feb2a04b0b044a631c906f213
 2025-01-20 21:38:02 +01:00
Ricardo Wurmus
041cc74743
gnu: python-ipfsspec: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-ipfsspec)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I763c22207f1b1bb5af5eb5667a060ab01757c864
 2025-01-20 21:38:02 +01:00
Ricardo Wurmus
d0d664cea1
gnu: python-contexttimer: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-contexttimer)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I1d6e1efe869624c1da47332c8a000f88b458c193
 2025-01-20 21:38:02 +01:00
Ricardo Wurmus
0e028beceb
gnu: python-psycopg: Update to 3.2.4. 
* gnu/packages/databases.scm (python-psycopg): Update to 3.2.4.
[build-system]: Use pyproject-build-system.
[arguments]: Simplify phases; restore 'sanity-check.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Iec2949c7e01e0dff2893181c3a49e8e3a3319446
 2025-01-20 21:38:02 +01:00
Ricardo Wurmus
0ffc5b3afb
gnu: python-sphinx-5: Disable one failing test. 
* gnu/packages/sphinx.scm (python-sphinx-5)[arguments]: Disable one test.

Change-Id: I97e5d4df511e11ac1335baaf99df839d5e58ed18
 2025-01-20 21:38:02 +01:00
Ricardo Wurmus
9b82726898
gnu: python-apiron: Add missing inputs. 
* gnu/packages/python-web.scm (python-apiron)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I98c35266870e2b2a9fa59f933350592cd0269721
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
def1f7ba66
gnu: Move python-pysnptools to (gnu packages bioinformatics). 
* gnu/packages/python-xyz.scm (python-pysnptools): Move from here...
* gnu/packages/bioinformatics.scm (python-pysnptools): ...to here.

Change-Id: I4dbd9cbe3f2d9a6dd4906be79b78862b39a57c28
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
84119015a3
gnu: python-pysnptools: Update to 0.5.14. 
* gnu/packages/python-xyz.scm (python-pysnptools): Update to 0.5.14.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[propagated-inputs]: Remove python-dill; add python-bed-reader,
python-cloudpickle, and python-more-itertools.
[native-inputs]: Remove python-cython; add python-pytest, python-pytest-cov,
python-pytest-datadir, python-pytest-doctestplus, python-setuptools,
python-sphinx, python-sphinx-rtd-theme, and python-wheel.

Change-Id: I685f819e70ab209198b504c6e41b253dc5a1d876
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
69e8a3f2f2
gnu: Add python-bed-reader. 
* gnu/packages/bioinformatics.scm (python-bed-reader): New variable.

Change-Id: Iad3f1d1c05abe706d8cd52a4d046247a5a9738e2
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
e9bd4e7a45
gnu: Add rust-numpy-0.22. 
* gnu/packages/crates-io.scm (rust-numpy-0.22): New variable.

Change-Id: Iba01905cb4284671771c195f8777e4c8179683b2
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
6d5986d836
gnu: Add rust-rusoto-credential-0.48. 
* gnu/packages/crates-web.scm (rust-rusoto-credential-0.48): New variable.

Change-Id: I22ff3f5a1b27bbbd3ca9204e26b9c6dadd440c53
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
f909a139aa
gnu: Add rust-ndarray-rand-0.15. 
* gnu/packages/crates-io.scm (rust-ndarray-rand-0.15): New variable.

Change-Id: I67863ccb0fdb7b74b40985a8162a2cfb6f236def
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
44bb624497
gnu: Add rust-ndarray-npy-0.9. 
* gnu/packages/crates-io.scm (rust-ndarray-npy-0.9): New variable.

Change-Id: I69bb42218e09a32250e8feeee0d6ca8e0a1a9845
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
2d91350bd0
gnu: Add rust-object-store-0.11. 
* gnu/packages/crates-io.scm (rust-object-store-0.11): New variable.

Change-Id: If6009cfde48eeffde5bc4055c943c4fe8a6ff797
 2025-01-20 21:38:01 +01:00
Ricardo Wurmus
7173c21a77
gnu: Add rust-statrs-0.17. 
* gnu/packages/crates-io.scm (rust-statrs-0.17): New variable.

Change-Id: I3c7ea9f6ecb2d635e62f5e655d9291064ff4b25a
 2025-01-20 21:38:00 +01:00
Ricardo Wurmus
8b107968f1
gnu: Add rust-py-literal-0.4. 
* gnu/packages/crates-io.scm (rust-py-literal-0.4): New variable.

Change-Id: Ie5b845a642bf862f062d3160e856969da9b21f3a
 2025-01-20 21:38:00 +01:00