Commit graph

144717 commits

Author SHA1 Message Date
Nicolas Graves
2dc38e493b
gnu: b4: Fix git binary access.
* gnu/packages/version-control.scm (b4)[arguments]<#:phases>: Fix
phase 'hardcode-git-bin.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-12-01 16:03:57 +08:00
Zheng Junjie
db8a0b480a
gnu: wget2: Use G-expressions.
* gnu/packages/wget.scm (wget2): Use G-expressions.

Change-Id: I8fbb5bab0746c5c98d2513fb31936ba56a8b7049
2024-12-01 16:03:54 +08:00
Ricardo Wurmus
adfda4a075
gnu: pigx-scrnaseq: Update to 1.1.10.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.10.
[arguments]: Remove quasiquote.

Change-Id: I6cab358addfb376a878929bfb5041edc00cd336a
2024-12-01 08:52:51 +01:00
Ricardo Wurmus
b21b8e909d
gnu: pigx-bsseq: Update to 0.1.10.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.10.
[native-inputs]: Use tzdata-for-tests instead of tzdata.
[arguments]: Remove quasiquote.

Change-Id: I680b08cda788fc03a8bedb87f241116a051798d6
2024-12-01 08:52:51 +01:00
Artyom V. Poptsov
aa40c94446
gnu: Add go-jqp.
* gnu/packages/golang-xyz.scm (go-jqp): New variable.

Change-Id: I736e039a456960e0e5864d7d197b2a6a823bbe58
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:41 +03:00
Artyom V. Poptsov
25a33a64b9
gnu: go-github-com-charmbracelet-bubbletea: Update to 1.2.3.
* gnu/packages/golang.scm (go-github-com-charmbracelet-bubbletea): Update to 1.2.3.
[propagated-inputs]: Add go-github-com-muesli-ansi,
go-github-com-muesli-cancelreader, go-github-com-charmbracelet-lipgloss,
go-github-com-charmbracelet-x-term, go-github-com-charmbracelet-x-ansi, and
go-golang-org-x-sync.  Sort inputs alphabetically.
[arguments] <phases>: Fix tests that are failing due to newer version of
"go-github-com-charmbracelet-x-ansi" package.

Change-Id: Ifdb3074f342b34c07c0e7ab47341b159d1eea0c2
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:41 +03:00
Artyom V. Poptsov
6aad5262d6
gnu: gojq: Adjust import and unpack paths.
* gnu/packages/web.scm (gojq) [arguments]<import-path>: Provide path to
the command source.
<unpack-path>: Set to "github.com/itchyny/gojq".

Change-Id: I6a4d0cbdba385460d7ab43d62fe1897922a7c7e9
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:41 +03:00
Artyom V. Poptsov
3ba6127415
gnu: go-github-com-itchyny-gojq: Install the library.
* gnu/packages/web.scm (go-github-com-itchyny-gojq): Install the library
files instead of "gojq" binary.
[arguments]: Remove <unpack-path>, adjust <import-path>.

Change-Id: I72235e0cfeee81b0e7490ebd9d92d0d36ceb1844
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:40 +03:00
Artyom V. Poptsov
47e941cb80
gnu: Add go-github-com-muesli-ansi.
* gnu/packages/golang-xyz.scm (go-github-com-muesli-ansi): New variable.

Change-Id: I3dbbd8af04373997fcb3c60872dff14ab1b2b76a
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:40 +03:00
Artyom V. Poptsov
689d2ac36c
gnu: Add go-github-com-charmbracelet-bubbles.
* gnu/packages/golang-xyz.scm (go-github-com-charmbracelet-bubbles): New variable.

Change-Id: I090db91509590ca9a8cab1a209d00bcc12b524e7
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:40 +03:00
Artyom V. Poptsov
9874cc5581
gnu: Add go-github-com-charmbracelet-lipgloss.
* gnu/packages/golang-xyz.scm (go-github-com-charmbracelet-lipgloss): New variable.

Change-Id: I73050c96830025ed63be7567873f8faf7573453d
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:39 +03:00
Artyom V. Poptsov
6152dc095b
gnu: Add go-github-com-charmbracelet-x-term.
* gnu/packages/golang-xyz.scm (go-github-com-charmbracelet-x-term): New variable.

Change-Id: I854febc3a3010f39051ee6fbd4a159993043d41e
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:39 +03:00
Artyom V. Poptsov
4fe2cb289f
gnu: Add go-github-com-charmbracelet-x-exp-golden.
* gnu/packages/golang-xyz.scm (go-github-com-charmbracelet-x-exp-golden): New variable.

Change-Id: I7fa815433d9a83e4562bdc769312dd05e0a298da
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:39 +03:00
Artyom V. Poptsov
222f672ca3
gnu: Add go-github-com-charmbracelet-x-ansi.
* gnu/packages/golang-xyz.scm (go-github-com-charmbracelet-x-ansi): New variable.

Change-Id: I1451ae9953bc87475413b83bb636a2df14ddc70c
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:38 +03:00
Artyom V. Poptsov
7c240b9838
gnu: Add go-github-com-sahilm-fuzzy.
* gnu/packages/golang-xyz.scm (go-github-com-sahilm-fuzzy): New variable.

Change-Id: Iebf4f8c3848e1e08b2860ac69a5a8d816ac260df
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:38 +03:00
Artyom V. Poptsov
f9f6ca8c54
gnu: Add go-github-com-kylelemons-godebug-pretty.
* gnu/packages/golang.scm (go-github-com-kylelemons-godebug-pretty): New variable.

Change-Id: Icd7d5fd70cf56d1ca74e9a2cfb929a3344128ba7
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:37 +03:00
Artyom V. Poptsov
703951b157
gnu: Add go-github-com-makenowjust-heredoc.
* gnu/packages/golang-xyz.scm (go-github-com-makenowjust-heredoc): New variable.

Change-Id: I686dfd6a798da764b004a53a562ca788e70f8cd5
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:37 +03:00
Artyom V. Poptsov
215ae40b5d
gnu: Add go-github-com-aymanbagabas-go-udiff.
* gnu/packages/golang-xyz.scm (go-github-com-aymanbagabas-go-udiff): New variable.

Change-Id: Icac934589b041c9b3b5db0114173d25d0c3f4c34
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:37 +03:00
Artyom V. Poptsov
58344dfb0e
gnu: Add go-github-com-atotto-clipboard.
* gnu/packages/golang-xyz.scm (go-github-com-atotto-clipboard): New variable.

Change-Id: I4a871983f564034045f4b2ba77f2453cfce5cb2b
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-01 10:27:36 +03:00
Efraim Flashner
1fb40a5b92
gnu: xrdp: Only build with nasm on necessary platforms.
* gnu/packages/rdesktop.scm (xrdp)[native-inputs]: Only include nasm on
platforms which need it.

Change-Id: I9f390af3c12752bc0c3696910170bc994b8a5fd6
2024-12-01 09:09:23 +02:00
Efraim Flashner
9c3feb3773
gnu: xorgxrdp: Only build with nasm on necessary platforms.
* gnu/packages/rdesktop.scm (xorgxrdp)[native-inputs]: Only include nasm
on platforms which need it.

Change-Id: I00778cf4b53776754525d42e0586076d4f2be61b
2024-12-01 09:04:21 +02:00
Artyom V. Poptsov
10e99250f4
gnu: go-github-com-arceliar-phony: Move to golang-xyz.
* gnu/packages/golang.scm (go-github-com-arceliar-phony): Move from here...
* gnu/packages/golang-xyz.scm: ...to here.

Change-Id: Ia50f331f23326fa8ae6e12b410c12d06cb369bf7
2024-11-30 20:05:31 +03:00
Artyom V. Poptsov
f8cb1c0a13
gnu: go-github-com-arceliar-ironwood: Move to golang-web.
* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): Move from here...
* gnu/packages/golang-web.scm: ...to here.

Change-Id: I6ae9084a88ffe0b7cb2d21234c246399e3e0f088
2024-11-30 19:58:40 +03:00
Artyom V. Poptsov
d3b24d3d78
gnu: yggdrasil: Update to 0.5.10.
* gnu/packages/networking.scm (yggdrasil): Update to 0.5.10.

Change-Id: Icbd55a218e54ea809bf48159aeae44bb64fc588a
2024-11-30 19:38:23 +03:00
Artyom V. Poptsov
b456e296dc
gnu: go-github-com-arceliar-phony: Update to v0.0.0-20220903101357-530938a4b13d.
* gnu/packages/golang.scm (go-github-com-arceliar-phony): Update to v0.0.0-20220903101357-530938a4b13d.

Change-Id: I440b785cb902e2a851698e249a273d88a4c937a3
2024-11-30 19:38:23 +03:00
Artyom V. Poptsov
09946106ad
gnu: go-github-com-arceliar-ironwood: Update to v0.0.0-20241122002527-75a6e82fa380.
* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): Update to v0.0.0-20241122002527-75a6e82fa380.

Change-Id: I34f65cf62f1ba2e7ff02d8bbcabcb2530eea5162
2024-11-30 19:38:18 +03:00
Sharlatan Hellseher
63508a6548
gnu: python-gatspy: Adjust inputs.
* gnu/packages/astronomy.scm (python-gatspy) [native-inputs]: Remove
python-nose.

Change-Id: Ifbbaedf62817339743ac2313626cd058134479d9
2024-11-30 15:10:46 +00:00
Sharlatan Hellseher
4181877dcd
gnu: python-yt-astro-analysis: Adjust inputs.
* gnu/packages/astronomy.scm (python-yt-astro-analysis) [native-inputs]:
Remove python-nose; add python-pytest.

Change-Id: I0b08ced355e739f1522cc749ea96db65413dc7b5
2024-11-30 15:10:46 +00:00
Sharlatan Hellseher
23f282229f
gnu: python-yt: Update to 4.4.0.
* gnu/packages/astronomy.scm (python-yt): Update to 4.4.0.
[arguments]<test-flags>: Disable some failing tests and tests requiring
network access.
[propagated-inputs]: Add python-astropy, python-cartopy,
python-glue-core, python-h5py, python-netcdf4, python-pandas,
python-pooch, python-regions, python-requests, and python-xarray.
[native-inputs]: Remove python-nose, python-nose-exclude, and
python-nose-timer; add nss-certs-for-test.

Change-Id: Ia868892b81fb8c5fc72ae20040b5f70ef936ff78
2024-11-30 15:10:46 +00:00
Sharlatan Hellseher
f3431988d6
gnu: python-synphot: Update to 1.5.0.
* gnu/packages/astronomy.scm (python-synphot): Update to 1.5.0.
Simplify package.
[arguments]<phases>: Use default 'check phase.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Iccc0c2bedc7075af3da2bc0ffb822787d40d6f41
2024-11-30 15:10:46 +00:00
Sharlatan Hellseher
201a8cd675
gnu: python-stsynphot: Update to 1.4.0.
* gnu/packages/astronomy.scm (python-stsynphot): Update to 1.4.0.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I9155f517358ecf651a47fe48a676202a2c19bb2f
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
c9b72c4ff8
gnu: python-stdatamodels: Update to 2.1.2.
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 2.1.2.

Change-Id: I59dec6df596c42b48cf6841c4d10857af9c92bd2
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
92c5c79919
gnu: python-stcal: Update to 1.10.0.
* gnu/packages/astronomy.scm (python-stcal): Update to 1.10.0.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: If0da286182d27e74af1278a7dfc1e3d54f6b8d23
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
eef2d2caf4
gnu: python-statmorph: Update to 0.6.0.
* gnu/packages/astronomy.scm (python-statmorph): Update to 0.6.0.
[arguments]<test-flags>: Enable all tests as issue is resolved upstream.
[propagated-inputs]: Remove python-matplotlib.

Change-Id: I48b71e590b9c4da4f09ab578767c05890110e8d4
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
3b386a922b
gnu: python-specutils: Update to 1.19.0.
* gnu/packages/astronomy.scm (python-specutils): Update to 1.19.0.

Change-Id: Ic90ecae2032682f893f7bfd7c4521d02d906fec1
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
d5bc9a94a1
gnu: python-sncosmo: Update to 2.11.2.
* gnu/packages/astronomy.scm (python-sncosmo): Update to 2.11.2.

Change-Id: I00ec74de18a88782895e185edb063e9508b90d46
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
b34852a4c3
gnu: python-sep-pjw: Update to 1.3.7.
* gnu/packages/astronomy.scm (python-sep-pjw): Update to 1.3.7.

Change-Id: I2adbb4b283ce2b545ce8dcd0671beb88a8fcd3b5
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
f9ef0789e2
gnu: python-roman-datamodels: Update to 0.22.0.
* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.22.0.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I7cfc5aed379c9056f93e1214ec5b06f56edced74
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
0e199a3113
gnu: python-reproject: Update to 0.14.1.
* gnu/packages/astronomy.scm (python-reproject): Update to 0.14.1.

Change-Id: I4d354d42193933cb50440383a544d25f9418749b
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
36706bbf1d
gnu: python-regularizepsf: Update to 1.0.2.
* gnu/packages/astronomy.scm (python-regularizepsf): Update to 1.0.2.
[source]: Swap to PyPI tarball as a fresh release contains tests now.
[phases]: Remove all custom ones.
[propagated-inputs]: Remove python-dill and python-lmfit.
[native-inputs]: Remove python-cython and python-pytest-runner; add
python-setuptools, python-setuptools-scm, and python-wheel.

Change-Id: I1c17bef1a1a21665b633d22282a9df37155e4f29
2024-11-30 15:10:45 +00:00
Sharlatan Hellseher
f2033e78a8
gnu: python-rad: Update to 0.22.0.
* gnu/packages/astronomy.scm (python-rad): Update to 0.22.0.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: If9509ccba985f08a3a6d263316beb263ff055db4
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
12fcf98071
gnu: python-pyvo: Update to 1.6.
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.6.

Change-Id: Iff2f08d372f950193c53f394d73be07b1f0a1de4
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
aeada768d7
gnu: python-pyerfa: Update to 2.0.1.5.
* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.1.5.

Change-Id: I9be430d4acacbbfccb4eaa928863864291ab2649
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
6d4e17b30c
gnu: python-photutils: Update to 2.0.2.
* gnu/packages/astronomy.scm (python-photutils): Update to 2.0.2.

Change-Id: I28b9d14f13157362c4781068c16c22b890c34a24
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
0da22e85ba
gnu: python-ndcube: Update to 2.2.4.
* gnu/packages/astronomy.scm (python-ndcube): Update to 2.2.4.

Change-Id: I326497497ca71d156ead1c45a14d24556fe6bd9b
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
be82e717c5
gnu: python-jwst: Update to 1.16.1.
* gnu/packages/astronomy.scm (python-jwst): Update to 1.16.1.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Id5c45dccc8f1b06826a3bae09e2b8bc68d6f5a20
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
6b705ecf41
gnu: python-cdflib: Update to 1.3.2.
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.3.2.

Change-Id: Ibd8ed32e12c09b3f9e88a668e92a9c1c9dc9db86
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
e8887bee98
gnu: python-astrodendro: Fix indentation.
* gnu/packages/astronomy.scm (python-astrodendro): Fix indentation.

Change-Id: I3bfe4cd012c55d6affaaab8c0ee8cee3d4f9847c
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
20a8dac0b5
gnu: python-astrodendro: Update to 0.3.1.
* gnu/packages/astronomy.scm (python-astrodendro): Update to 0.3.1.
[source]: Swap to PyPI tarball containing a fresh release.
[phases]: Remove 'set-env-version, no longer required.

Change-Id: I3180990d8a12747b7b301680a705f956a7f47e0c
2024-11-30 15:10:44 +00:00
Sharlatan Hellseher
0cd1b7d3dd
gnu: python-astroalign: Update to 2.6.1.
* gnu/packages/astronomy.scm (python-astroalign): Update to 2.6.1.

Change-Id: I2181e07f4e90750e8855ead326bf7d0b97956089
2024-11-30 15:10:44 +00:00