Ricardo Wurmus
|
b05ecbce42
|
gnu: r-freetypeharfbuzz: Disable tests.
* gnu/packages/cran.scm (r-freetypeharfbuzz)[arguments]: Disable tests.
[native-inputs]: Add r-testthat.
Change-Id: Ibd82aacff87c79b2c3f061035b14bb750fcee239
|
2024-12-03 10:54:15 +01:00 |
|
Ricardo Wurmus
|
70f0cf0cf9
|
gnu: r-mzr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mzr)[native-inputs]: Add r-codetools,
r-msdata, r-mzid, and r-xml.
Change-Id: Iaeb8286a19ddb1bc750710a0e5d5a5cee59b3901
|
2024-12-03 10:54:15 +01:00 |
|
Ricardo Wurmus
|
bae6c15a33
|
gnu: r-depmixs4: Add missing input.
* gnu/packages/cran.scm (r-depmixs4)[native-inputs]: Add r-gamlss.
Change-Id: Ib7f2ab4f656bda824f2375d0d3ea59908ad1aa5c
|
2024-12-03 10:54:15 +01:00 |
|
Ricardo Wurmus
|
182332fdce
|
gnu: r-sanssouci: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sanssouci)[native-inputs]: Add r-ggplot2
and r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I902b4e4a2163f5ed9cf07d186dfe80068a8ef4a5
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
38b5e102ca
|
gnu: r-unigd: Add missing input.
* gnu/packages/cran.scm (r-unigd)[native-inputs]: Add r-xml2.
Change-Id: Ice50673f8092cf37b2e26bc47bd2b1040e5e652a
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
1c1bc2b855
|
gnu: r-birewire: Add missing input.
* gnu/packages/bioconductor.scm (r-birewire)[native-inputs]: Add
r-biocgenerics.
Change-Id: I3d07db1bd5cafd88f05afe67fc7bf43e07946365
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
11582cba0f
|
gnu: r-seurat5: Deprecate.
* gnu/packages/cran.scm (r-seurat5): Deprecate in favor of r-seurat.
Change-Id: I906ec3bf0d82f93db108ac5f58394bae40347f81
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
2657893bad
|
gnu: r-seurat5object: Deprecate.
* gnu/packages/cran.scm (r-seurat5object): Deprecate in favor of
r-seuratobject.
Change-Id: I44865a9a28b337071ff59462226cf77ad60e4f0f
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
dcc10fbb17
|
gnu: r-downloader: Disable tests.
* gnu/packages/cran.scm (r-downloader)[arguments]: Disable tests.
Change-Id: I69834c27c64153a046aa1022b32826bf0c383b5c
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
28703e2fe9
|
gnu: r-scico: Add missing input.
* gnu/packages/cran.scm (r-scico)[native-inputs]: Add r-dplyr and r-ggplot2.
Change-Id: Ia5a81c607bf9417413dbfcb396cc3b63191e4d15
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
2f46e78161
|
gnu: r-tm: Add missing input.
* gnu/packages/cran.scm (r-tm)[native-inputs]: Add r-snowballc.
Change-Id: I55b18e9c64965746e7563519a483ea688830f6fc
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
cabe33be01
|
gnu: r-stm: Disable vignettes, add test inputs.
* gnu/packages/cran.scm (r-stm)[arguments]: Disable vignettes.
[native-inputs]: Add r-tm.
Change-Id: Ib880a15c940b70054018fb03750e60537561f19b
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
a3c24895b2
|
gnu: r-bridgesampling: Fix vignettes.
* gnu/packages/cran.scm (r-bridgesampling)[arguments]: Add phase 'set-HOME.
Change-Id: Ibde578ee3530fc56b2ee61dc28450260295d283b
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
d6b908092b
|
gnu: r-readbitmap: Add missing inputs.
* gnu/packages/cran.scm (r-readbitmap)[native-inputs]: Add r-pixmap.
Change-Id: I3f8132db83651c091fd8eef3445874f2eb3d98d8
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
d6f538ebdb
|
gnu: r-dyngen: Fix tests.
* gnu/packages/cran.scm (r-dyngen)[arguments]: Add phase 'set-HOME.
Change-Id: If47090b0f9f1d4a0a794ca00ef2ed90226148ab3
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
3f418b67fc
|
gnu: r-variancepartition: Add missing inputs.
* gnu/packages/bioconductor.scm (r-variancepartition)[native-inputs]: Add
r-edger and r-rfast.
Change-Id: I5b9bd4e378d0e7dbd5bc3efc67b96bd1beb563b1
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
7fa90090d5
|
gnu: r-annotationhub: Disable tests.
* gnu/packages/bioconductor.scm (r-annotationhub)[arguments]: Disable tests.
Change-Id: I00a9778eb5d8cd031b956c583f12f42921fec4e2
|
2024-12-03 10:54:14 +01:00 |
|
Ricardo Wurmus
|
24d16b8f4a
|
gnu: r-treeio: Add missing inputs.
* gnu/packages/bioconductor.scm (r-treeio)[native-inputs]: Add r-igraph and
r-xml2.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I0c5e8ef566acbc8593c6c27a6cc7776778937876
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
8b1907470f
|
gnu: r-gofuncr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gofuncr)[native-inputs]: Add r-homo-sapiens.
Change-Id: I66d6e9985fc420c93eaf77afa348b7bbd29381c7
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
d3d701ded9
|
gnu: r-organismdbi: Disable tests.
* gnu/packages/bioconductor.scm (r-organismdbi)[arguments]: Disable tests.
Change-Id: I1a669db2ffc8f9e5bf00666bdfbc53a060508dc6
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
3b66f6eaa8
|
gnu: r-txdbmaker: Add test inputs.
* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
2c7f3e365c
|
gnu: Add r-rmariadb.
* gnu/packages/cran.scm (r-rmariadb): New variable.
Change-Id: I12ec88bb93170b4d59f62e3d89bf3d0e110b0eae
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
9115989ad8
|
gnu: r-biomart: Add test inputs.
* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2
and r-mockery.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
b03d4d4648
|
gnu: Add r-httptest2.
* gnu/packages/cran.scm (r-httptest2): New variable.
Change-Id: Iaaf40d07c1bea2213359857eeae86eeead90fbc4
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
0e5969cb8b
|
gnu: Add r-webfakes.
* gnu/packages/cran.scm (r-webfakes): New variable.
Change-Id: Ia7bcf571bfbefe046b6fbd129a969fd118cf0760
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
fbadfceaa0
|
gnu: r-metagenomeseq: Add test inputs.
* gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
2ac5589b47
|
gnu: r-ioniser: Add missing inputs.
* gnu/packages/bioconductor.scm (r-ioniser)[native-inputs]: Add
r-minionsummarydata.
Change-Id: Ie478db21c33c6d279937678b8103cca5df228a09
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
f6cadbee05
|
gnu: Add r-minionsummarydata.
* gnu/packages/bioconductor.scm (r-minionsummarydata): New variable.
Change-Id: I61318a1338bbff117e38d3ce5963dd061e5175a9
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
6b601eb88a
|
gnu: r-rnacrosslinkoo: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-rnacrosslinkoo)[native-inputs]: Add
r-testthat.
Change-Id: Iedd2dee7a32dcd19a99d25d92b6f453dd197f5b4
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
f714066523
|
gnu: r-glimma: Add missing inputs.
* gnu/packages/bioconductor.scm (r-glimma)[native-inputs]: Add r-pryr.
Change-Id: I9109cc636e758df436aaae38c3b2bd735b1e4cc0
|
2024-12-03 10:54:13 +01:00 |
|
Ricardo Wurmus
|
ab1832bd42
|
gnu: r-systempiper: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-systempiper)[native-inputs]: Add
r-systempiperdata.
[arguments]: Disable tests.
Change-Id: Ic071bbcb53ef9fb96385fbbdb5725ed2a4490db7
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
bff0dcfaff
|
gnu: r-roar: Add missing inputs.
* gnu/packages/bioconductor.scm (r-roar)[native-inputs]: Add
r-rnaseqdata-hnrnpc-bam-chr14.
Change-Id: Ic5fa181d52e87ba7039e0000f5610eb46150bbfc
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
7c4f1bc424
|
gnu: Add r-systempiperdata.
* gnu/packages/bioconductor.scm (r-systempiperdata): New variable.
Change-Id: I125e8003073ffc5fa7f20d3efa0f3ead71eaafe3
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
bb7b854ad4
|
gnu: r-sgseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
40befd7f1e
|
gnu: Add r-rnaseqdata-hnrnpc-bam-chr14.
* gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): New variable.
Change-Id: If2f9bf10e3e1396cfd31e3278020d623ce2253e0
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
073056638c
|
gnu: r-bedtorch: Disable tests.
* gnu/packages/bioinformatics.scm (r-bedtorch)[arguments]: Disable tests.
[native-inputs]: Add r-testthat.
Change-Id: Ia06aca330528eb2b9eea569d5d12db0f12d6511e
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
e0c512a00a
|
gnu: r-bioqc: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-ineq.
Change-Id: I090a0d25f87d23119e66a69ca37c16d7b384a01a
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
d75c2ab5de
|
gnu: r-organism-dplyr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-organism-dplyr)[native-inputs]: Add
r-txdb-hsapiens-ucsc-hg38-knowngene and r-txdb-mmusculus-ucsc-mm10-ensgene.
Change-Id: I1dbf8d71f9a29d1a95e70a4b44042155af4a1222
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
1be441ce2b
|
gnu: r-genomicdatacommons: Delete bad tests.
* gnu/packages/bioconductor.scm (r-genomicdatacommons)[arguments]: Add phase
'delete-bad-tests.
Change-Id: I9e09a99cc3e07d4d3a568d1058c717a74de925bc
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
5059e00e19
|
gnu: Add r-txdb-mmusculus-ucsc-mm10-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-ensgene): New variable.
Change-Id: I5caa7d292ea0f81df5acf3f522fd3cf1ca9acb13
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
38fc3af466
|
gnu: r-ctrdata: Fix vignettes.
* gnu/packages/cran.scm (r-ctrdata)[arguments]: Add phase 'set-HOME.
Change-Id: I0191e69b9970fd0fe2c85dffa19839b94760befd
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
09cfee2d5e
|
gnu: r-megadepth: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add
megadepth.
[arguments]: Disable tests.
[inputs]: Remove empty field.
[properties]: Tell updater to keep megadepth as a propagated input.
Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
|
2024-12-03 10:54:12 +01:00 |
|
Ricardo Wurmus
|
955b2aadaf
|
gnu: r-alpine: Add missing inputs.
* gnu/packages/bioconductor.scm (r-alpine)[native-inputs]: Add r-testthat.
Change-Id: I0dece0c9def13b5aed392b0a8404ee96e3d57ab5
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
95c7c27dca
|
gnu: r-tgutil: Add missing inputs.
* gnu/packages/statistics.scm (r-tgutil)[native-inputs]: Add r-testthat.
Change-Id: Idb64f13cfcd01db56362fb77c4aca41095e4cf0a
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
850ec1b9c0
|
gnu: r-biocdockermanager: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add
r-testthat.
Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
8c914f51ee
|
gnu: r-motifdb: Add missing inputs.
* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo.
Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
12a40c7701
|
gnu: r-dittoseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add
r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and
r-plotly.
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
d0b406f8dc
|
gnu: r-vipor: Disable vignettes.
* gnu/packages/statistics.scm (r-vipor)[arguments]: Disable vignettes.
Change-Id: I58c8e4b7b7eb6d6f1693f34199721fd0bcbf6c82
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
f3463b0d5f
|
gnu: r-presto: Add missing inputs.
* gnu/packages/bioconductor.scm (r-presto)[native-inputs]: Add r-testthat.
Change-Id: I3fe5ec83478e384fe34701b0672b6f216255b1d6
|
2024-12-03 10:54:11 +01:00 |
|
Ricardo Wurmus
|
a006ba48d9
|
gnu: r-complexheatmap: Add missing inputs.
* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add
r-dendextend, r-genomicranges, and r-gridtext.
Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
|
2024-12-03 10:54:11 +01:00 |
|