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gnu: python-pypairix: Update to 0.3.8 and fix buildi with gcc-14.

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* gnu/packages/bioinformatics.scm (python-pypairix): Update to 0.3.8.
[arguments]: Use G-Expressions.  Add phase "relax-gcc-14-strictness".

Change-Id: I5766c457da18ec7c9fedd83a583dc5e244f33dea
This commit is contained in:
Janneke Nieuwenhuizen 2025-01-03 10:07:41 +01:00
parent e9aa7e372f
commit 0dff3a12c1
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GPG key ID: F3C1A0D9C1D65273
1 changed files with 16 additions and 12 deletions
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gnu/packages/bioinformatics.scm
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@ -19132,7 +19132,7 @@ (define-public python-intervaltree
(define-public python-pypairix (define-public python-pypairix
(package (package
(name "python-pypairix") (name "python-pypairix")
(version "0.3.7") (version "0.3.8")
;; The tarball on pypi does not include the makefile to build the ;; The tarball on pypi does not include the makefile to build the
;; programs. ;; programs.
(source (source
@ -19144,19 +19144,23 @@ (define-public python-pypairix
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"1snr3lrmsld8sy77ng6ba6wcmd33xjccf1l2f3m6pi29xis9nd6p")))) "1jlxj3xa67q1i58pmbi6imhvl6f5w9m5qxv0xd45ba86mp8mnmvz"))))
(build-system python-build-system) (build-system python-build-system)
(arguments (arguments
`(#:phases (list
(modify-phases %standard-phases #:phases
(add-before 'build 'build-programs #~(modify-phases %standard-phases
(lambda _ (invoke "make"))) (add-before 'build 'relax-gcc-14-strictness
(add-after 'install 'install-programs (lambda _
(lambda* (#:key outputs #:allow-other-keys) (setenv "CFLAGS"
(copy-recursively "bin" (string-append (string-append "-g -O2"
(assoc-ref outputs "out") " -Wno-error=incompatible-pointer-types"
"/bin")) " -Wno-error=int-conversion"))))
#t))))) (add-before 'build 'build-programs
(lambda _ (invoke "make")))
(add-after 'install 'install-programs
(lambda _
(copy-recursively "bin" (string-append #$output "/bin")))))))
(inputs (inputs
(list zlib)) (list zlib))
(home-page "https://github.com/4dn-dcic/pairix") (home-page "https://github.com/4dn-dcic/pairix")