diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8f37d08f00..01758d9922 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -19132,7 +19132,7 @@ (define-public python-intervaltree (define-public python-pypairix (package (name "python-pypairix") - (version "0.3.7") + (version "0.3.8") ;; The tarball on pypi does not include the makefile to build the ;; programs. (source @@ -19144,19 +19144,23 @@ (define-public python-pypairix (file-name (git-file-name name version)) (sha256 (base32 - "1snr3lrmsld8sy77ng6ba6wcmd33xjccf1l2f3m6pi29xis9nd6p")))) + "1jlxj3xa67q1i58pmbi6imhvl6f5w9m5qxv0xd45ba86mp8mnmvz")))) (build-system python-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'build 'build-programs - (lambda _ (invoke "make"))) - (add-after 'install 'install-programs - (lambda* (#:key outputs #:allow-other-keys) - (copy-recursively "bin" (string-append - (assoc-ref outputs "out") - "/bin")) - #t))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'relax-gcc-14-strictness + (lambda _ + (setenv "CFLAGS" + (string-append "-g -O2" + " -Wno-error=incompatible-pointer-types" + " -Wno-error=int-conversion")))) + (add-before 'build 'build-programs + (lambda _ (invoke "make"))) + (add-after 'install 'install-programs + (lambda _ + (copy-recursively "bin" (string-append #$output "/bin"))))))) (inputs (list zlib)) (home-page "https://github.com/4dn-dcic/pairix")