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gnu: python-pypairix: Update to 0.3.8 and fix buildi with gcc-14.
* gnu/packages/bioinformatics.scm (python-pypairix): Update to 0.3.8. [arguments]: Use G-Expressions. Add phase "relax-gcc-14-strictness". Change-Id: I5766c457da18ec7c9fedd83a583dc5e244f33dea
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1 changed files with 16 additions and 12 deletions
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@ -19132,7 +19132,7 @@ (define-public python-intervaltree
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(define-public python-pypairix
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(package
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(name "python-pypairix")
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(version "0.3.7")
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(version "0.3.8")
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;; The tarball on pypi does not include the makefile to build the
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;; programs.
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(source
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@ -19144,19 +19144,23 @@ (define-public python-pypairix
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1snr3lrmsld8sy77ng6ba6wcmd33xjccf1l2f3m6pi29xis9nd6p"))))
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"1jlxj3xa67q1i58pmbi6imhvl6f5w9m5qxv0xd45ba86mp8mnmvz"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-before 'build 'build-programs
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(lambda _ (invoke "make")))
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(add-after 'install 'install-programs
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(lambda* (#:key outputs #:allow-other-keys)
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(copy-recursively "bin" (string-append
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(assoc-ref outputs "out")
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"/bin"))
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#t)))))
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(list
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'build 'relax-gcc-14-strictness
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(lambda _
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(setenv "CFLAGS"
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(string-append "-g -O2"
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" -Wno-error=incompatible-pointer-types"
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" -Wno-error=int-conversion"))))
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(add-before 'build 'build-programs
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(lambda _ (invoke "make")))
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(add-after 'install 'install-programs
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(lambda _
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(copy-recursively "bin" (string-append #$output "/bin")))))))
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(inputs
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(list zlib))
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(home-page "https://github.com/4dn-dcic/pairix")
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