Ricardo Wurmus
|
cb630fa340
|
gnu: r-riboseqr: Add missing input.
* gnu/packages/bioconductor.scm (r-riboseqr)[native-inputs]: Add r-biocstyle.
Change-Id: I969eb0cea1051578d785a04adb5fd7770b18ab62
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
1c86cc30f5
|
gnu: r-survey: Add missing inputs.
* gnu/packages/cran.scm (r-survey)[native-inputs]: Add r-aer, r-mass, and
r-rsqlite.
[arguments]: Add phase 'set-HOME.
Change-Id: I6cac861edb1672cbcad3a76846223ba812224681
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
d4893e7340
|
gnu: r-biocviews: Disable tests.
* gnu/packages/bioconductor.scm (r-biocviews)[arguments]: Disable tests.
Change-Id: Ic66fd71421b041098da31a38d7101b1bf013110a
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
62202e9190
|
gnu: r-boruta: Add missing inputs.
* gnu/packages/cran.scm (r-boruta)[native-inputs]: Add r-rferns.
Change-Id: I04475e0d30040203f958ee473d5bb1e3e23634d8
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
f611dd3da3
|
gnu: r-anf: Disable tests.
* gnu/packages/bioconductor.scm (r-anf)[arguments]: Disable tests.
Change-Id: Id30bf651b086860224d2d52cb59d50221311736b
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
d36f41c3fe
|
gnu: r-flowcore: Disable tests.
* gnu/packages/bioconductor.scm (r-flowcore)[arguments]: Disable tests.
Change-Id: If8c97ed20a782357cc2c01e2bdd361d59419c260
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
127aaacee3
|
gnu: Add r-rferns.
* gnu/packages/cran.scm (r-rferns): New variable.
Change-Id: I1aa80f3b5abb98c7bee5903a640cfd7b45ef1196
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
899d3394e5
|
gnu: r-bedr: Disable tests.
* gnu/packages/cran.scm (r-bedr)[arguments]: Disable tests.
Change-Id: Ib0057f60a794b9cd0d52f5c4cd92079b74808824
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
5d73904f72
|
gnu: r-bumphunter: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bumphunter)[native-inputs]: Add
r-doparallel, r-runit, and r-txdb-hsapiens-ucsc-hg19-knowngene.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I86c3515ad5ad124742b244c085f0084342680168
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
3f33e65e28
|
gnu: r-batchelor: Add missing inputs.
* gnu/packages/bioconductor.scm (r-batchelor)[native-inputs]: Add r-bluster
and r-scran.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: Id23065c7b4b8209ddd058e1a68a88b2142df1bd1
|
2024-12-03 16:59:47 +01:00 |
|
Ricardo Wurmus
|
d8336a0cff
|
gnu: r-model4you: Add missing inputs.
* gnu/packages/cran.scm (r-model4you)[native-inputs]: Add r-plyr,
r-psychotools, r-strucchange, and r-th-data.
Change-Id: Ib79c42068c1d839c9ce59f58d860ae22727fe547
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
9a07bd1137
|
gnu: r-singler: Add missing inputs.
* gnu/packages/bioconductor.scm (r-singler)[native-inputs]: Add
r-scuttle and r-singlecellexperiment.
Change-Id: I1629f5b206a0fbc8035b1d2a31315570933b9375
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
38462deac0
|
gnu: r-spatialexperiment: Add missing inputs.
* gnu/packages/bioconductor.scm (r-spatialexperiment)[native-inputs]: Add
r-dropletutils.
[arguments]: Add phase 'set-HOME.
Change-Id: Ie08e76e22d6bf0410da2f590ac5f388f316e9111
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
cc64d612b5
|
gnu: r-abbyyr: Add missing inputs.
* gnu/packages/cran.scm (r-abbyyr)[native-inputs]: Add r-knitr and r-testthat.
Change-Id: I22f32e7ea4f3aee0e4a8d1ba486495ea22789e0e
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
32657c03bc
|
gnu: r-psupertime: Add missing input.
* gnu/packages/bioinformatics.scm (r-psupertime)[native-inputs]: Add
r-testthat.
Change-Id: I9993547e2e757b4218c2229495a7eaa0c8fecbe2
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
92301c7a27
|
gnu: r-demuxmix: Add missing input.
* gnu/packages/bioinformatics.scm (r-demuxmix)[native-inputs]: Add r-testthat.
Change-Id: Ia09b929b4d5bb521d58fb74f17f1ac91a4d44a60
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
6ec643fd9d
|
gnu: r-cmdstanr: Add missing input.
* gnu/packages/bioinformatics.scm (r-cmdstanr)[native-inputs]: Add
r-testthat.
Change-Id: Idd81b903e9e9a8308703c9ee8dc5583a04854678
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
3ec6dd568c
|
gnu: r-asset: Add missing input.
* gnu/packages/bioconductor.scm (r-asset)[native-inputs]: Add r-biocgenerics.
Change-Id: Iecfe6093665033d41b43d0ead6fa9d3f3fd54d81
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
7deb8c97a9
|
gnu: r-savr: Disable vignettes.
* gnu/packages/bioconductor.scm (r-savr)[native-inputs]: Add r-testthat.
[arguments]: Disable vignettes.
Change-Id: If5a5928d3f7fde5d3360184b229894d92b715d03
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
93d88c0498
|
gnu: r-lemon: Add missing input.
* gnu/packages/cran.scm (r-lemon)[native-inputs]: Add r-vdiffr.
Change-Id: If7cf93031ea6a97176d7c39751aa8d6fd0858ca5
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
53212b2dc8
|
gnu: r-sqldf: Add missing input.
* gnu/packages/cran.scm (r-sqldf)[native-inputs]: Add r-svunit.
Change-Id: Id62cb9aec38c547ca08f0b9ca57c190d68ef232f
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
7aa901c394
|
gnu: r-regioner: Add missing input.
* gnu/packages/bioconductor.scm (r-regioner)[native-inputs]: Add
r-biocmanager.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I452297d9b7c776624e54bec376ed14efe4521d55
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
71c935e456
|
gnu: r-biotmle: Disable tests.
* gnu/packages/bioconductor.scm (r-biotmle)[native-inputs]: Add r-biotmledata.
[arguments]: Disable tests.
Change-Id: Ia854a6278055a2617db62cbe360b8e108e5584c7
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
7c30bdafcf
|
gnu: Add r-biotmledata.
* gnu/packages/bioconductor.scm (r-biotmledata): New variable.
Change-Id: If0793889ddf09b31333c8331cc5ad87f72c16ac2
|
2024-12-03 16:59:46 +01:00 |
|
Ricardo Wurmus
|
eb688fe356
|
gnu: r-qdnaseq: Add missing input.
* gnu/packages/bioconductor.scm (r-qdnaseq)[native-inputs]: Add r-biocstyle.
Change-Id: I6a22fb4208122c5f1a6c50421129722e5b98e11d
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
d172bb40d2
|
gnu: r-motifmatchr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-motifmatchr)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
Change-Id: I90b4c258c9685047287e1e5eedbdbe9b9ce26f8f
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
9a1917a1cb
|
gnu: r-glmgampoi: Add missing inputs.
* gnu/packages/bioconductor.scm (r-glmgampoi)[native-inputs]: Add
r-biocparallel, r-limma, r-mass, r-scran, and r-zoo.
Change-Id: I5019e1b6efdad8c98245bef7512265b2141f78c9
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
01ce0a7fac
|
gnu: r-activedriverwgs: Add missing input.
* gnu/packages/bioconductor.scm (r-activedriverwgs)[native-inputs]: Add
r-testthat.
Change-Id: Ieb45284d6a240bc88081da0018a7163a66e78b22
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
50e6d756a5
|
gnu: r-refgenome: Disable tests.
* gnu/packages/cran.scm (r-refgenome)[arguments]: Disable tests.
Change-Id: I950bdf4463485fb1880934da096915ad50f3ae9e
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
4682cb8dc2
|
gnu: r-sictools: Disable tests.
* gnu/packages/bioconductor.scm (r-sictools)[arguments]: Disable tests.
Change-Id: Id692ec7c7d5dcb17628fe818b7d116e9261ad60f
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
6e2668fdc5
|
gnu: r-ffbase: Add missing inputs.
* gnu/packages/cran.scm (r-ffbase)[native-inputs]: Add r-laf and r-testthat.
Change-Id: I6e7e84d823e4bf4467829a78bbe8b77e26f25b8d
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
0dcdeea3e5
|
gnu: r-gutils: Add missing input.
* gnu/packages/bioinformatics.scm (r-gutils)[native-inputs]: Add r-testthat.
Change-Id: I1b5e34441b48bc92bff6538378d2e2bbc7111631
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
f99bc50abd
|
gnu: Add r-laf.
* gnu/packages/cran.scm (r-laf): New variable.
Change-Id: I666b904506a929bd6bfac6782d1f4f489282ae84
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
2d66334e5e
|
gnu: r-bamsignals: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bamsignals)[native-inputs]: Add
r-rsamtools.
Change-Id: Ifdca0e50c90349ba4179f80ea1fed91cd9ba37db
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
9116b849a4
|
gnu: r-biocthis: Disable tests.
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Disable tests.
Change-Id: Icd1a846013a36c3c8555bdcb2d6ba7dce6a8e09c
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
c58048da10
|
gnu: r-rticles: Add missing inputs.
* gnu/packages/cran.scm (r-rticles)[native-inputs]: Add r-testthat and
r-withr.
Change-Id: Ia5776a0f08623f79fee2f9a9a3d2a6eeb45c9ded
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
03d4f3705f
|
gnu: r-rsconnect: Add missing input.
* gnu/packages/cran.scm (r-rsconnect)[native-inputs]: Add tzdata-for-tests.
Change-Id: I3bf6ef36aa5e8737aa17ce74c9141b5e784fa6df
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
2166e08d03
|
gnu: r-visnetwork: Disable tests.
* gnu/packages/cran.scm (r-visnetwork)[arguments]: Disable tests.
Change-Id: I8eb926630ff35dcf6833f6dca73b54e58d84700f
|
2024-12-03 16:59:45 +01:00 |
|
Ricardo Wurmus
|
a5119e93c5
|
gnu: r-mi: Add missing inputs.
* gnu/packages/cran.scm (r-mi)[native-inputs]: Add r-betareg, r-survival, and
r-truncnorm.
Change-Id: I79350494404965b3f1b610dafcd1e05f3fc0c02f
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
05741b0fbe
|
gnu: r-spectra: Disable tests.
* gnu/packages/bioconductor.scm (r-spectra)[arguments]: Disable tests.
[native-inputs]: Add missing inputs r-mzr and r-patrick.
Change-Id: I7d9dca3c1f17c0a57d7b6cc7479e08ea5bb11843
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
82786d8617
|
gnu: Add r-betareg.
* gnu/packages/cran.scm (r-betareg): New variable.
Change-Id: I67839c22e6374dcd9e9f0c12d08770d8103ead6d
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
9b9bc99439
|
gnu: r-powertcr: Add missing input.
* gnu/packages/bioconductor.scm (r-powertcr)[native-inputs]: Add
r-biocgenerics.
Change-Id: Ieb0f7f2bd4362a9f1d6c4a0b9b937e8be81b7323
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
b3f700896a
|
gnu: r-freetypeharfbuzz: Disable tests.
* gnu/packages/cran.scm (r-freetypeharfbuzz)[arguments]: Disable tests.
[native-inputs]: Add r-testthat.
Change-Id: Ibd82aacff87c79b2c3f061035b14bb750fcee239
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
8f0455f153
|
gnu: r-mzr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mzr)[native-inputs]: Add r-codetools,
r-msdata, r-mzid, and r-xml.
Change-Id: Iaeb8286a19ddb1bc750710a0e5d5a5cee59b3901
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
b1efd13a3c
|
gnu: r-depmixs4: Add missing input.
* gnu/packages/cran.scm (r-depmixs4)[native-inputs]: Add r-gamlss.
Change-Id: Ib7f2ab4f656bda824f2375d0d3ea59908ad1aa5c
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
226eb57b34
|
gnu: r-sanssouci: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sanssouci)[native-inputs]: Add r-ggplot2
and r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I902b4e4a2163f5ed9cf07d186dfe80068a8ef4a5
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
e58111a25f
|
gnu: r-unigd: Add missing input.
* gnu/packages/cran.scm (r-unigd)[native-inputs]: Add r-xml2.
Change-Id: Ice50673f8092cf37b2e26bc47bd2b1040e5e652a
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
c2b57f66da
|
gnu: r-birewire: Add missing input.
* gnu/packages/bioconductor.scm (r-birewire)[native-inputs]: Add
r-biocgenerics.
Change-Id: I3d07db1bd5cafd88f05afe67fc7bf43e07946365
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
1fb9537d36
|
gnu: r-seurat5: Deprecate.
* gnu/packages/cran.scm (r-seurat5): Deprecate in favor of r-seurat.
Change-Id: I906ec3bf0d82f93db108ac5f58394bae40347f81
|
2024-12-03 16:59:44 +01:00 |
|
Ricardo Wurmus
|
4642e2d2df
|
gnu: r-seurat5object: Deprecate.
* gnu/packages/cran.scm (r-seurat5object): Deprecate in favor of
r-seuratobject.
Change-Id: I44865a9a28b337071ff59462226cf77ad60e4f0f
|
2024-12-03 16:59:44 +01:00 |
|