Ricardo Wurmus
|
5970cba439
|
gnu: r-scico: Add missing input.
* gnu/packages/cran.scm (r-scico)[native-inputs]: Add r-dplyr and r-ggplot2.
Change-Id: Ia5a81c607bf9417413dbfcb396cc3b63191e4d15
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
f6fe7b6747
|
gnu: r-tm: Add missing input.
* gnu/packages/cran.scm (r-tm)[native-inputs]: Add r-snowballc.
Change-Id: I55b18e9c64965746e7563519a483ea688830f6fc
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
2c0cfac33f
|
gnu: r-stm: Disable vignettes, add test inputs.
* gnu/packages/cran.scm (r-stm)[arguments]: Disable vignettes.
[native-inputs]: Add r-tm.
Change-Id: Ib880a15c940b70054018fb03750e60537561f19b
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
5abd83bd62
|
gnu: r-bridgesampling: Fix vignettes.
* gnu/packages/cran.scm (r-bridgesampling)[arguments]: Add phase 'set-HOME.
Change-Id: Ibde578ee3530fc56b2ee61dc28450260295d283b
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
79fe65171d
|
gnu: r-readbitmap: Add missing inputs.
* gnu/packages/cran.scm (r-readbitmap)[native-inputs]: Add r-pixmap.
Change-Id: I3f8132db83651c091fd8eef3445874f2eb3d98d8
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
344702da27
|
gnu: r-dyngen: Fix tests.
* gnu/packages/cran.scm (r-dyngen)[arguments]: Add phase 'set-HOME.
Change-Id: If47090b0f9f1d4a0a794ca00ef2ed90226148ab3
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
a8e5c1b581
|
gnu: r-variancepartition: Add missing inputs.
* gnu/packages/bioconductor.scm (r-variancepartition)[native-inputs]: Add
r-edger and r-rfast.
Change-Id: I5b9bd4e378d0e7dbd5bc3efc67b96bd1beb563b1
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
5ad404c683
|
gnu: r-annotationhub: Disable tests.
* gnu/packages/bioconductor.scm (r-annotationhub)[arguments]: Disable tests.
Change-Id: I00a9778eb5d8cd031b956c583f12f42921fec4e2
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
c2aab92f42
|
gnu: r-treeio: Add missing inputs.
* gnu/packages/bioconductor.scm (r-treeio)[native-inputs]: Add r-igraph and
r-xml2.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I0c5e8ef566acbc8593c6c27a6cc7776778937876
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
1f0808a5c1
|
gnu: r-gofuncr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gofuncr)[native-inputs]: Add r-homo-sapiens.
Change-Id: I66d6e9985fc420c93eaf77afa348b7bbd29381c7
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
61cd388435
|
gnu: r-organismdbi: Disable tests.
* gnu/packages/bioconductor.scm (r-organismdbi)[arguments]: Disable tests.
Change-Id: I1a669db2ffc8f9e5bf00666bdfbc53a060508dc6
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
199636cd7b
|
gnu: r-txdbmaker: Add test inputs.
* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
44e4c7a6de
|
gnu: Add r-rmariadb.
* gnu/packages/cran.scm (r-rmariadb): New variable.
Change-Id: I12ec88bb93170b4d59f62e3d89bf3d0e110b0eae
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
0af2fc1f06
|
gnu: r-biomart: Add test inputs.
* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2
and r-mockery.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
|
2024-12-03 16:59:43 +01:00 |
|
Ricardo Wurmus
|
1cf17225b0
|
gnu: Add r-httptest2.
* gnu/packages/cran.scm (r-httptest2): New variable.
Change-Id: Iaaf40d07c1bea2213359857eeae86eeead90fbc4
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
4b19b18cda
|
gnu: Add r-webfakes.
* gnu/packages/cran.scm (r-webfakes): New variable.
Change-Id: Ia7bcf571bfbefe046b6fbd129a969fd118cf0760
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
ec8709d5eb
|
gnu: r-metagenomeseq: Add test inputs.
* gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
b4c9f8368a
|
gnu: r-ioniser: Add missing inputs.
* gnu/packages/bioconductor.scm (r-ioniser)[native-inputs]: Add
r-minionsummarydata.
Change-Id: Ie478db21c33c6d279937678b8103cca5df228a09
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
35550df0e5
|
gnu: Add r-minionsummarydata.
* gnu/packages/bioconductor.scm (r-minionsummarydata): New variable.
Change-Id: I61318a1338bbff117e38d3ce5963dd061e5175a9
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
0afafd8b21
|
gnu: r-rnacrosslinkoo: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-rnacrosslinkoo)[native-inputs]: Add
r-testthat.
Change-Id: Iedd2dee7a32dcd19a99d25d92b6f453dd197f5b4
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
82ace693ec
|
gnu: r-glimma: Add missing inputs.
* gnu/packages/bioconductor.scm (r-glimma)[native-inputs]: Add r-pryr.
Change-Id: I9109cc636e758df436aaae38c3b2bd735b1e4cc0
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
5460c2aed8
|
gnu: r-systempiper: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-systempiper)[native-inputs]: Add
r-systempiperdata.
[arguments]: Disable tests.
Change-Id: Ic071bbcb53ef9fb96385fbbdb5725ed2a4490db7
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
877c366285
|
gnu: r-roar: Add missing inputs.
* gnu/packages/bioconductor.scm (r-roar)[native-inputs]: Add
r-rnaseqdata-hnrnpc-bam-chr14.
Change-Id: Ic5fa181d52e87ba7039e0000f5610eb46150bbfc
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
8c08529608
|
gnu: Add r-systempiperdata.
* gnu/packages/bioconductor.scm (r-systempiperdata): New variable.
Change-Id: I125e8003073ffc5fa7f20d3efa0f3ead71eaafe3
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
7cc00303ec
|
gnu: r-sgseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
af70af3529
|
gnu: Add r-rnaseqdata-hnrnpc-bam-chr14.
* gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): New variable.
Change-Id: If2f9bf10e3e1396cfd31e3278020d623ce2253e0
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
d344c8dd7a
|
gnu: r-bedtorch: Disable tests.
* gnu/packages/bioinformatics.scm (r-bedtorch)[arguments]: Disable tests.
[native-inputs]: Add r-testthat.
Change-Id: Ia06aca330528eb2b9eea569d5d12db0f12d6511e
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
c8612c38a4
|
gnu: r-bioqc: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-ineq.
Change-Id: I090a0d25f87d23119e66a69ca37c16d7b384a01a
|
2024-12-03 16:59:42 +01:00 |
|
Ricardo Wurmus
|
47141f2cc4
|
gnu: r-organism-dplyr: Add missing inputs.
* gnu/packages/bioconductor.scm (r-organism-dplyr)[native-inputs]: Add
r-txdb-hsapiens-ucsc-hg38-knowngene and r-txdb-mmusculus-ucsc-mm10-ensgene.
Change-Id: I1dbf8d71f9a29d1a95e70a4b44042155af4a1222
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4dd6d8a4ba
|
gnu: r-genomicdatacommons: Delete bad tests.
* gnu/packages/bioconductor.scm (r-genomicdatacommons)[arguments]: Add phase
'delete-bad-tests.
Change-Id: I9e09a99cc3e07d4d3a568d1058c717a74de925bc
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
b004a53d62
|
gnu: Add r-txdb-mmusculus-ucsc-mm10-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-ensgene): New variable.
Change-Id: I5caa7d292ea0f81df5acf3f522fd3cf1ca9acb13
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
8ba6083276
|
gnu: r-ctrdata: Fix vignettes.
* gnu/packages/cran.scm (r-ctrdata)[arguments]: Add phase 'set-HOME.
Change-Id: I0191e69b9970fd0fe2c85dffa19839b94760befd
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
353620e84a
|
gnu: r-megadepth: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add
megadepth.
[arguments]: Disable tests.
[inputs]: Remove empty field.
[properties]: Tell updater to keep megadepth as a propagated input.
Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
2f5201970e
|
gnu: r-alpine: Add missing inputs.
* gnu/packages/bioconductor.scm (r-alpine)[native-inputs]: Add r-testthat.
Change-Id: I0dece0c9def13b5aed392b0a8404ee96e3d57ab5
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
ef48e575c4
|
gnu: r-tgutil: Add missing inputs.
* gnu/packages/statistics.scm (r-tgutil)[native-inputs]: Add r-testthat.
Change-Id: Idb64f13cfcd01db56362fb77c4aca41095e4cf0a
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
5c35a8713f
|
gnu: r-biocdockermanager: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add
r-testthat.
Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
438324d633
|
gnu: r-motifdb: Add missing inputs.
* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo.
Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4133b726d2
|
gnu: r-dittoseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add
r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and
r-plotly.
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
9cbd953283
|
gnu: r-vipor: Disable vignettes.
* gnu/packages/statistics.scm (r-vipor)[arguments]: Disable vignettes.
Change-Id: I58c8e4b7b7eb6d6f1693f34199721fd0bcbf6c82
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
ddad87926c
|
gnu: r-presto: Add missing inputs.
* gnu/packages/bioconductor.scm (r-presto)[native-inputs]: Add r-testthat.
Change-Id: I3fe5ec83478e384fe34701b0672b6f216255b1d6
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
1e2f293b00
|
gnu: r-complexheatmap: Add missing inputs.
* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add
r-dendextend, r-genomicranges, and r-gridtext.
Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4822f81f38
|
gnu: r-fishpond: Add missing inputs.
* gnu/packages/bioconductor.scm (r-fishpond)[native-inputs]: Add r-data-table,
r-deseq2, and r-samr.
Change-Id: I5e3c827f274a20ff410287f39b3a57de66b77f01
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
0b191fda81
|
gnu: r-psiplot: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-psiplot)[native-inputs]: Add r-testthat.
Change-Id: I19ad7216f86968c87abad64313bf09d03e3ad612
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
90c656d7f7
|
gnu: r-geoquery: Disable tests.
* gnu/packages/bioconductor.scm (r-geoquery)[arguments]: Disable tests.
Change-Id: Ibd30534cfb1f6bd4927f16908a749dd1881932e4
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
93e4af9ffd
|
gnu: r-productplots: Add missing inputs.
* gnu/packages/cran.scm (r-productplots)[native-inputs]: Add r-reshape2.
Change-Id: Id1604a4859b2fef076dd1485b25ae185175173e0
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
3d81ebcd65
|
gnu: r-annotationforge: Add missing inputs.
* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add
r-go-db.
Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
3124b2d0ab
|
gnu: r-greylistchip: Add missing inputs.
* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add
r-biocstyle.
Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
132a8451a1
|
gnu: r-omnipathr/devel: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-omnipathr/devel)[native-inputs]: Add
r-testthat.
Change-Id: I7e339871d65ed0ff263db14ff9fb0aa1bb3ed0bb
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
cf61116d55
|
gnu: r-pcatools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran.
Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
fd4174e97e
|
gnu: r-sva: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle,
r-bladderbatch, r-pamr, and r-zebrafishrnaseq.
Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
|
2024-12-03 16:59:40 +01:00 |
|