Commit graph

153184 commits

Author SHA1 Message Date
Ricardo Wurmus
b334549d49
gnu: Add r-geojsonr.
* gnu/packages/cran.scm (r-geojsonr): New variable.

Change-Id: I61848ccf286951bb7602e9695de20a8da7478306
2025-01-23 15:59:20 +01:00
Ricardo Wurmus
e3f3095895
gnu: Add r-vitesscer.
* gnu/packages/bioinformatics.scm (r-vitesscer): New variable.

Change-Id: I3e0426abd2ed1346efb833ab21c2524d28b41a99
2025-01-23 15:59:20 +01:00
Tomas Volf
a1074ecbcb
doc: htmlxref.cnf: Fix link to The GNU Stow Manual.
At the same time the reference text is adjusted.  I found it confusing for
link to the `Top' to be labeled `Introduction'.  So let us just link to the
`Introduction', it is probably what the author intended.

* doc/htmlxref.cnf (stow): Add both mono and node versions.
* doc/guix.texi (Essential Home Services): Link to `Introduction' node of GNU
Stow's manual.

Change-Id: Ib82d2eecfb655694a0af73e1aec9fcd68c3994e3
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2025-01-23 23:52:04 +09:00
Tomas Volf
6e3d855b48
doc: htmlxref.cnf: Add link to debbugs-ug.
* doc/htmlxref.cnf (ELPA, ELPA_DOC): New variables.
(debbugs-ug): Define `mono' version.

Change-Id: I3a914354df732ec8d2cc92d56e551ba63c723041
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2025-01-23 23:51:58 +09:00
Tomas Volf
a9ba67b910
doc: htmlxref.cnf: Trim trailing whitespace characters.
Change-Id: Idda2684864248b1ef11acff31bc145b1cbdabe9d
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2025-01-23 23:51:52 +09:00
Tomas Volf
17600c6f65
doc: htmlxref.cnf: Use write-file-functions.
The write-file-hooks is deprecated since Emacs 22.1, so switch to the
suggested replacement.

* doc/htmlxref.cnf (add-hook): Use 'write-file-functions.

Change-Id: Ia652ace9a5b5ffb971999372348fa4133f909a4e
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2025-01-23 23:51:44 +09:00
Maxim Cournoyer
91cb83ce31
gnu: Add cmakelang.
* gnu/packages/cmake.scm (cmakelang): New variable.

Change-Id: I7f66c178191863922795918b42da8c3abf3b87e2
2025-01-23 21:10:07 +09:00
jgart
4241a5a468
gnu: trealla: Update to 2.63.29.
* gnu/packages/prolog.scm (trealla): Update to 2.63.29.

Change-Id: Ifa1dcb6928ac193081de3d1a280dece32be4fdb6
2025-01-22 19:20:15 -06:00
Alexis Simon
cc678d0e4d
gnu: Add r-sigfit.
* gnu/packages/bioinformatics.scm (r-sigfit): New variable.

Change-Id: I9d63975d3512cf8583e7ec22f450bb4963c9ff2f
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2025-01-22 22:01:18 +01:00
Thanos Apollo
daab8d5c79
gnu: emacs-yeetube: Update to 2.1.8.
* gnu/packages/emacs-xyz.scm (emacs-yeetube): Update to 2.1.8.

Change-Id: Ic31cc3aba3b691b3ff14bd7f2789b83bfe8c4ae7
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2025-01-22 20:29:00 +01:00
Liliana Marie Prikler
d1c24f2e1f
gnu: Add komikku-servers.
* gnu/packages/gnome.scm (komikku-servers): New variable.
2025-01-22 20:29:00 +01:00
Liliana Marie Prikler
0065e6ff3e
gnu: komikku: Update to 1.57.0.
* gnu/packages/gnome.scm (komikku): Update to 1.57.0.
[inputs]: Add python-pillow-heif.
[native-search-paths]: Add KOMIKKU_SERVERS_PATH.
2025-01-22 20:29:00 +01:00
Liliana Marie Prikler
e81ec3314e
gnu: Add python-pillow-heif.
* gnu/packages/python-xyz.scm (python-pillow-heif): New variable.
2025-01-22 20:28:59 +01:00
David Thompson
30327e379b
gnu: guile-hoot: Update to 0.6.0.
* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.6.0.

Change-Id: Ib0394fa75b798240f3378fa40803e55a4b5afcb2
2025-01-22 13:17:51 -05:00
Ricardo Wurmus
9fa107c774
gnu: Add python-pot.
* gnu/packages/machine-learning.scm (python-pot): New variable.

Change-Id: I2a844a41031ce80d46a3ffe03ead9652d5a87348
2025-01-22 15:44:12 +01:00
Ricardo Wurmus
803befde95
gnu: Add python-pymanopt.
* gnu/packages/machine-learning.scm (python-pymanopt): New variable.

Change-Id: Id10413a0f2f76a8a3ac9e6fee22005a92625323c
2025-01-22 15:44:02 +01:00
Ricardo Wurmus
18a25a69ba
gnu: python-sphinx-click: Update to 6.0.0.
* gnu/packages/sphinx.scm (python-sphinx-click): Update to 6.0.0.
[arguments]: Add phase 'fix-build-system; remove custom 'check phase.
[native-inputs]: Remove python-pbr; add python-setuptools.

Change-Id: I0796ee373f9172686753d5d32d274917828d3b41
2025-01-22 15:28:25 +01:00
Ricardo Wurmus
f8e9462982
gnu: Add python-geomloss.
* gnu/packages/machine-learning.scm (python-geomloss): New variable.

Change-Id: Id54d81c8c942c69151a7667983073a28419170d0
2025-01-22 15:28:25 +01:00
Ricardo Wurmus
d53a56f7c7
gnu: python-jupyter-sphinx: Update to 0.5.3.
* gnu/packages/sphinx.scm (python-jupyter-sphinx): Update to 0.5.3.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add phase 'ignore-warnings.
[native-inputs]: Add python-hatchling and python-ipykernel.

Change-Id: I94979e034fa45da898aed0dd37bcea4f37a5a5f8
2025-01-22 15:28:25 +01:00
Tomas Volf
fee9ac7191
gnu: opensmtpd: Fix fix for queuing of offline messages.
The substituted path in smtpd.h was not used due to an #ifndef.  The correct
place to patch it seems to be mk/pathnames.  This sadly triggers a bootstrap,
so we need to add autoconf and automake to the native-inputs.

* gnu/packages/mail.scm (opensmtpd)[arguments]<#:phases>
{'patch-test-FHS-file-names}: Patch in mk/pathnames instead.
[native-inputs]: Add autoconf and automake.

Change-Id: I1d569b8aaae839d6fd4871ccb97c116e6930f1c9
Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-01-22 15:20:05 +01:00
Andy Tai
3e7047e058
gnu: gnuradio: Update to 3.10.11.0.
* gnu/packages/radio.scm (gnuradio): Update to 3.10.11.0.

Change-Id: I4d8b83effcadd831f1cfc769bfcfb90d4a1439f5
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2025-01-22 14:20:02 +01:00
Aaron Covrig
a4c89856e5
gnu: gpa: Update to 0.11.0.
* gnu/packages/gnupg.scm (gpa): Update to 0.11.0.
  [inputs]: Replace gtk+-2 by gtk+.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I4ca1165b6753dbed922049f2f2839a5be5abd6da
2025-01-22 14:20:02 +01:00
Junker
98a494f000
gnu: Add cl-trivial-battery.
* gnu/packages/lisp-xyz.scp (cl-trivial-battery, ecl-trivial-battery,
  sbcl-trivial-battery): New variables.

Change-Id: Icdcf77738ba71e4705410aadedd6fe6f7babf1e1
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2025-01-22 14:20:02 +01:00
Andre A. Gomes
373cc5e14a
gnu: sbcl-alexandria: Add info manual.
* gnu/packages/lisp-xyz.scm (sbcl-alexandria)[native-inputs]: Add texinfo.
  [arguments]: Add 'build-doc' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: Ib8e6a5f4a0a20bf9c78a65bb15bb63e7a0d66ad5
2025-01-22 14:20:02 +01:00
Efraim Flashner
45b898619c
gnu: js8call: Remove ruby-asciidoctor.
* gnu/packages/radio.scm (js8call)[native-inputs]: Remove
ruby-asciidoctor.

Change-Id: Id551c21e3e54d360abc28269f9f07dc424ba07e8
2025-01-22 14:39:28 +02:00
Efraim Flashner
52fe992264
gnu: jtdx: Enable building on more systems.
* gnu/packages/radio.scm (jtdx)[native-inputs]: Only add
ruby-asciidoctor on supported systems.
[arguments]: When building without ruby-asciidoctor add a configure-flag
to skip building the documentation.

Change-Id: Ie167c703ac92743b201573d1a883ae2ff6ccd879
2025-01-22 14:39:28 +02:00
Efraim Flashner
51d8303578
gnu: open-adventure: Enable building on more systems.
* gnu/packages/games.scm (open-adventure)[arguments]: Adjust or remove
some phases when building without ruby-asciidoctor.
[native-inputs]: Only add ruby-asciidoctor on supported systems.

Change-Id: I573a488721557442769f4e8b9e68ea1e70d4fbf0
2025-01-22 14:39:28 +02:00
Efraim Flashner
3626491d04
gnu: chrony: Enable building on more systems.
* gnu/packages/ntp.scm (chrony)[arguments]: Add a phase to enable
building without ruby-asciidoctor.
[native-inputs]: Only add ruby-asciidoctor on supported systems.

Change-Id: I812cea438cb8c2b1f74d7674baa70b9159151c8f
2025-01-22 14:39:28 +02:00
Efraim Flashner
a4f2fe119e
gnu: btrbk: Enable building on more systems.
* gnu/packages/backup.scm (btrbk)[arguments]: Add some phases to enable
building without ruby-asciidoctor.
[native-inputs]: Only add ruby-asciidoctor on supported systems.

Change-Id: I86b5b1b307d3a226cae0231d85519ebb96a29f8c
2025-01-22 14:39:28 +02:00
Ricardo Wurmus
b08a08448e
gnu: hdf-java: Update to 1.10.9.
The version string does not seem like an upgrade, but it is.  hdf-java used to
be released separately up to version 3.3.2.  It is now part of the hdf5
sources.

* gnu/packages/maths.scm (hdf-java): Update to 1.10.9.
[source]: Fetch hdf5 sources from git.
[arguments]: Adjust configure flags; add phase 'unbundle; remove phase
'build-examples.
[native-inputs]: Drop labels.
[inputs]: Replace hdf5-1.8 with hdf5; drop labels.

Change-Id: I30ef41aa9255d6d4eb49f5382a6fe5a62080e6fa
2025-01-22 12:54:18 +01:00
Navid Afkhami
8ac97e627e
gnu: Add r-phytools.
* gnu/packages/cran.scm (r-phytools): New variable.

Change-Id: Ie4fa9f40febf3b114a3da38b9cdf668e8ac415ca
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2025-01-22 12:39:32 +01:00
Zheng Junjie
eac904c723
gnu: nvc: Update to 1.15.1.
* gnu/packages/fpga.scm (nvc): Update to 1.15.1.
[native-inputs]: Remove gnu-gettext; add gettext-minimal.

Change-Id: Ic71084121b1bdb2f3c37f863edd305c16d2d7ea6
2025-01-22 19:22:02 +08:00
Zheng Junjie
6d54f34513
gnu: nvc: Improve package style.
* gnu/packages/fpga.scm (nvc)[source]: Use git-file-name. Remove .git to fix
the redirection.
[arguments]: Use G-expressions.

Change-Id: I44115f13503ae5b3f82cc50cb2fc31168ea3a714
2025-01-22 19:21:03 +08:00
Cayetano Santos
deafd4b03a
gnu: nvc: Update to 1.15.0.
* gnu/packages/fpga.scm (nvc): Update to 1.15.0.

Change-Id: I57daabd058131048af538388a01a3cb0cddc13e4
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2025-01-22 19:13:22 +08:00
Cayetano Santos
0f13746222
gnu: yosys: Update to 0.49.
* gnu/packages/fpga.scm (yosys): Update to 0.49.

Change-Id: I19963b3e0dffaa1e4e4698f09f2be09055469baa
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2025-01-22 19:13:22 +08:00
Efraim Flashner
49cb321eb7
gnu: picom: Enable building without ruby-asciidoctor.
* gnu/packages/compton.scm (picom)[native-inputs]: Only add
ruby-asciidoctor on supported systems.
[arguments]: Only build the documentation when ruby-asciidoctor is in
the native-inputs.

Change-Id: Id0940df578a0620c2efe474c27bd3abd7a4d2d9c
2025-01-22 13:06:41 +02:00
Efraim Flashner
e3066fe7da
gnu: parinfer-rust-emacs: Remove cargo package labels.
* gnu/packages/text-editors.scm (parinfer-rust-emacs)[arguments]: Remove
the package input labels from the cargo-inputs.

Change-Id: I38649bb638c7e7b8970cec9489dbae6d9e1afb84
2025-01-22 12:41:08 +02:00
Lee Thompson
53f8435b8f
gnu: parinfer-rust-emacs: Update to 0.4.7.
From 06a4fdf0a1215c25a1ccac7afce6e4b9c4b4af64 Mon Sep 17 00:00:00 2001
From: Lee Thompson <lee.p.thomp@gmail.com>
Date: Mon, 20 Jan 2025 19:02:22 +0000
Subject: [PATCH] gnu: parinfer-rust-emacs: Update to 0.4.7.
To: guix--patches@gnu.org

* gnu/packages/text-editors.scm (parinfer-rust-emacs): Update to 0.4.7

Change-Id: Ib35f6eda453b211105cedd8efcfa5c78af888b21
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2025-01-22 12:41:05 +02:00
Zheng Junjie
220e323893
gnu: ark: Update to 24.12.1.
* gnu/packages/kde-utils.scm (ark): Update to 24.12.1.
* gnu/packages/patches/ark-skip-xar-test.patch: Adjust it.

Change-Id: Ib8cb7ec347b6373a2fbe7857925dea4b0d7af782
2025-01-22 18:22:24 +08:00
Zheng Junjie
74536e137d
gnu: krita: Update to 5.2.6.
* gnu/packages/kde.scm (krita): Update to 5.2.6.

Change-Id: Ida0e4a8863dd978cbea3b3704c2024727b5ea579
2025-01-22 18:22:24 +08:00
Andreas Fuglesteg Dale
033e074eef
gnu: picom: Update to 12.5.
* gnu/packages/compton.scm (picom): Update to 12.5.
[native-inputs]: Add ruby-asciidoctor, Remove asciidoc.

Change-Id: I8bbc55240845b509736fba031bcc26a80ae26b5e
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2025-01-22 18:22:21 +08:00
Zheng Junjie
0c6bd084e2
gnu: okular: Update to 24.12.1.
* gnu/packages/kde.scm (okular): Update to 24.12.1.

Change-Id: Ib3193be49015c2d0c9b8252b867d3372bcf2515b
2025-01-22 18:20:38 +08:00
Zheng Junjie
ea6b4990af
gnu: poxml: Update to 24.12.1.
* gnu/packages/kde.scm (poxml): Update to 24.12.1.
[inputs]: Remove qtbase-5; add qtbase.
[native-inputs]: Remove kdoctools-5; add kdoctools.

Change-Id: Ib1cf01ded9882e3f99625f21a4353ea1841483bd
2025-01-22 18:20:38 +08:00
Ian Eure
e4e3068124
gnu: librewolf: Update to 134.0.1-1 [security fixes].
New upstream release.  Some minor tweaks needed, like switching from gzip to
pigz, updating icu4c, and ensuring it builds with the correct Rust version.

CVE-2025-0237: WebChannel APIs susceptible to confused deputy attack
CVE-2025-0238: Use-after-free when breaking lines in text
CVE-2025-0239: Alt-Svc ALPN validation failure when redirected
CVE-2025-0240: Compartment mismatch when parsing JavaScript JSON
               module
CVE-2025-0241: Memory corruption when using JavaScript Text
               Segmentation
CVE-2025-0242: Memory safety bugs fixed in Firefox 134, Thunderbird
               134, Firefox ESR 115.19, Firefox ESR 128.6, Thunderbird
               115.19, and Thunderbird 128.6
CVE-2025-0243: Memory safety bugs fixed in Firefox 134, Thunderbird
               134, Firefox ESR 128.6, and Thunderbird 128.6
CVE-2025-0244: Address bar spoofing using an invalid protocol scheme
               on Firefox for Android
CVE-2025-0245: Lock screen setting bypass in Firefox Focus for Android
CVE-2025-0246: Address bar spoofing using an invalid protocol scheme
               on Firefox for Android
CVE-2025-0247: Memory safety bugs fixed in Firefox 134 and Thunderbird
               134

* gnu/packages/librewolf.scm (librewolf): Update to 134.0.1-1.

Change-Id: I027bf6f1541b0e7bec9116b2d6b39ab606813b23
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2025-01-22 18:20:38 +08:00
Ian Eure
fd351356e0
gnu: librewolf: Tidy code formatting.
* gnu/packages/librewolf.scm (librewolf): Tidy code formatting.

Change-Id: I0341da820f170c26888800ea433e539f2a6a2520
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2025-01-22 18:20:38 +08:00
Ian Eure
a99ddc8b53
gnu: make-librewolf-source: Take l10n package as an arg.
* gnu/packages/librewolf.scm (make-librewolf-source): Take l10n package as an
arg.

Change-Id: I3c405edc07edb54e27afee16325c93a83d37ad79
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2025-01-22 18:20:38 +08:00
Ian Eure
461a860f06
gnu: firefox-l10n: Update to d219efa7c64850dfb5904893e17a5431c7058192.
* gnu/packages/librewolf.scm (firefox-l10n): Update to d219efa7c64850dfb5904893e17a5431c7058192.

Change-Id: Ia4303f13a0cbf7c4908410b735b509a4a5f505cd
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2025-01-22 18:20:38 +08:00
Zheng Junjie
e3d6188dfd
gnu: adms: Fix build.
Fixes <https://issues.guix.gnu.org/75740>.

* gnu/packages/engineering.scm (adms): Fix build.
[arguments]<#:phases>: Add patch-shebang phase.

Change-Id: I4c3f3ae9777277cc37997bcaa7a7e6258bbd478f
2025-01-22 18:20:34 +08:00
Efraim Flashner
4efe9833bd
gnu: vim: Update to 9.1.1046.
* gnu/packages/vim.scm (vim): Update to 9.1.1046.
[arguments]: Skip another test.

Change-Id: I93a8ab67274cea2fee1fc1cdeb85ed9a06cd4599
2025-01-22 12:18:22 +02:00
Lars Bilke
343073b4cb
gnu: Add exprtk.
* gnu/packages/maths.scm (exprtk): New variable.

Change-Id: I25e5a37cfd72b4b47dedc36916781b6ac355501e
Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-01-22 11:03:32 +01:00