Ricardo Wurmus
|
5c35a8713f
|
gnu: r-biocdockermanager: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add
r-testthat.
Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
438324d633
|
gnu: r-motifdb: Add missing inputs.
* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo.
Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4133b726d2
|
gnu: r-dittoseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add
r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and
r-plotly.
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
9cbd953283
|
gnu: r-vipor: Disable vignettes.
* gnu/packages/statistics.scm (r-vipor)[arguments]: Disable vignettes.
Change-Id: I58c8e4b7b7eb6d6f1693f34199721fd0bcbf6c82
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
ddad87926c
|
gnu: r-presto: Add missing inputs.
* gnu/packages/bioconductor.scm (r-presto)[native-inputs]: Add r-testthat.
Change-Id: I3fe5ec83478e384fe34701b0672b6f216255b1d6
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
1e2f293b00
|
gnu: r-complexheatmap: Add missing inputs.
* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add
r-dendextend, r-genomicranges, and r-gridtext.
Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
4822f81f38
|
gnu: r-fishpond: Add missing inputs.
* gnu/packages/bioconductor.scm (r-fishpond)[native-inputs]: Add r-data-table,
r-deseq2, and r-samr.
Change-Id: I5e3c827f274a20ff410287f39b3a57de66b77f01
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
0b191fda81
|
gnu: r-psiplot: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-psiplot)[native-inputs]: Add r-testthat.
Change-Id: I19ad7216f86968c87abad64313bf09d03e3ad612
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
90c656d7f7
|
gnu: r-geoquery: Disable tests.
* gnu/packages/bioconductor.scm (r-geoquery)[arguments]: Disable tests.
Change-Id: Ibd30534cfb1f6bd4927f16908a749dd1881932e4
|
2024-12-03 16:59:41 +01:00 |
|
Ricardo Wurmus
|
93e4af9ffd
|
gnu: r-productplots: Add missing inputs.
* gnu/packages/cran.scm (r-productplots)[native-inputs]: Add r-reshape2.
Change-Id: Id1604a4859b2fef076dd1485b25ae185175173e0
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
3d81ebcd65
|
gnu: r-annotationforge: Add missing inputs.
* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add
r-go-db.
Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
3124b2d0ab
|
gnu: r-greylistchip: Add missing inputs.
* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add
r-biocstyle.
Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
132a8451a1
|
gnu: r-omnipathr/devel: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-omnipathr/devel)[native-inputs]: Add
r-testthat.
Change-Id: I7e339871d65ed0ff263db14ff9fb0aa1bb3ed0bb
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
cf61116d55
|
gnu: r-pcatools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran.
Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
fd4174e97e
|
gnu: r-sva: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle,
r-bladderbatch, r-pamr, and r-zebrafishrnaseq.
Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
15493dbf3d
|
gnu: Add r-zebrafishrnaseq.
* gnu/packages/bioconductor.scm (r-zebrafishrnaseq): New variable.
Change-Id: I5fe044acef56aba8601fea9cc766bbf69594714b
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
0a2a23b015
|
gnu: r-mlinterfaces: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mlinterfaces)[native-inputs]: Add
r-golubesets.
Change-Id: I509c44b49974c423ce138db74dc0275de5a6570d
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
c71f959346
|
gnu: Add r-oligodata.
* gnu/packages/bioconductor.scm (r-oligodata): New variable.
Change-Id: I605b877f91c068180c55da5ecbbd62b6071fde3c
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
ad54870cd0
|
gnu: Add r-pd-mapping50k-hind240.
* gnu/packages/bioconductor.scm (r-pd-mapping50k-hind240): New variable.
Change-Id: I11680ac9b36494565f22f83cc4cae49f8d751b13
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
dadd2ab005
|
gnu: r-oligo: Disable tests.
* gnu/packages/bioconductor.scm (r-oligo)[arguments]: Disable tests.
Change-Id: Ief8655fed61142efa86cdf0170e417fde2f4c617
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
2424b73815
|
gnu: r-oligoclasses: Disable tests.
* gnu/packages/bioconductor.scm (r-oligoclasses)[arguments]: Disable tests.
Change-Id: I0f8513449464a7fce0a353bcaf62b67bc58f31fe
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
d80c49da93
|
gnu: r-oligoclasses: Add missing inputs.
* gnu/packages/bioconductor.scm (r-oligoclasses)[native-inputs]: Add
r-genomewidesnp6crlmm and r-human370v1ccrlmm.
Change-Id: I597e4fe28ec054376a8a4bbf2f87492d1a7bdce1
|
2024-12-03 16:59:40 +01:00 |
|
Ricardo Wurmus
|
dc0649af27
|
gnu: Add r-human370v1ccrlmm.
* gnu/packages/bioconductor.scm (r-human370v1ccrlmm): New variable.
Change-Id: I46b8f5aa896fb1357cfe0329bbd6e25d7fd9db9c
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
11a2385e7c
|
gnu: Add r-genomewidesnp6crlmm.
* gnu/packages/bioconductor.scm (r-genomewidesnp6crlmm): New variable.
Change-Id: I6291cc56961076ecff1fba835e936036e7fdf35b
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
512215a427
|
gnu: r-linnorm: Add missing inputs.
* gnu/packages/bioconductor.scm (r-linnorm)[native-inputs]: Add r-matrixstats
and r-moments.
Change-Id: I5b1273c24d865bf90b481f426a3cc70032bdfc47
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
46f90414e4
|
gnu: r-varianttools: Add missing inputs.
* gnu/packages/bioconductor.scm (r-varianttools)[native-inputs]: Add
r-lungcancerlines.
Change-Id: I0d9d226a15d56d5ff9873ccc3b2f1b7cad31d8af
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
ef4c6b1b04
|
gnu: Add r-lungcancerlines.
* gnu/packages/bioconductor.scm (r-lungcancerlines): New variable.
Change-Id: I4f688432cf3ec4361cd870ef12abef8678a5f665
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
6b2dda4068
|
gnu: r-millefy: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-millefy)[native-inputs]: Add r-testthat.
Change-Id: Id5d1f74074f05f1af2e3726e9a9e49f2d63f13c9
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
8e037e51c0
|
gnu: r-structuralvariantannotation: Add missing inputs.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation)
[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19 and r-tidyverse.
Change-Id: I2f91947e09b046f314faefc86bd2bbfdd7bf14de
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
d4e0ad36e1
|
gnu: r-annmap: Fix tests.
* gnu/packages/bioconductor.scm (r-annmap)[arguments]: Add phase 'set-HOME.
Change-Id: I0962b8da16f121bca7b5f1b619386447875dd108
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
f90b5b907b
|
gnu: r-chipcomp: Add missing inputs.
* gnu/packages/bioconductor.scm (r-chipcomp)[native-inputs]: Add r-biocstyle.
Change-Id: I7aeab9d0169480602286bce5f1374b70d2c50e75
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
7913e1437a
|
gnu: r-mutationalpatterns: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mutationalpatterns)[native-inputs]: Add
r-ccfindr.
Change-Id: I294c6c4d361c70c55e58509b2ff6512c24dd3978
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
3587a8c4e0
|
gnu: r-zonator: Add test inputs.
* gnu/packages/cran.scm (r-zonator)[native-inputs]: Add r-testthat.
Change-Id: I9cf262f2176b770d229fb0c7d9df217e9ab8a45c
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
9024b73395
|
gnu: Add r-ccfindr.
* gnu/packages/bioconductor.scm (r-ccfindr): New variable.
Change-Id: Icc76252494a1750888b8218df36ed002096c0268
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
9137a812b0
|
gnu: Add r-fmesher.
* gnu/packages/cran.scm (r-fmesher): New variable.
Change-Id: Ic9abf1b6ca383dba429366324b40877d4f51245a
|
2024-12-03 16:59:39 +01:00 |
|
Ricardo Wurmus
|
cdd933d35a
|
gnu: r-abn: Add test inputs.
* gnu/packages/bioconductor.scm (r-abn)[arguments]: Add phase
'delete-bad-tests.
[native-inputs]: Add r-entropy, r-moments, and r-rhpcblasctl.
Change-Id: Id981a537882ecc620232049e6831de657ec7f29a
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
65ea023a14
|
gnu: r-singlet: Add test inputs.
* gnu/packages/bioinformatics.scm (r-singlet)[native-inputs]: Add r-testthat.
Change-Id: I617f6bbb9e11ef00148571b94a4aaf2d445cfcb2
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
03e27bb867
|
gnu: r-rapportools: Disable tests.
* gnu/packages/cran.scm (r-rapportools)[arguments]: Disable tests.
Change-Id: Ied42ce54bea57a36f4885b5e0093fe9d3b8da03e
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
586f8fe9c1
|
gnu: r-zoon: Disable tests.
* gnu/packages/cran.scm (r-zoon)[arguments]: Disable tests.
Change-Id: I9d8c02c66fd95f1111914b02588f7841c2d46f39
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
3f428ecb79
|
gnu: r-kegggraph: Add test inputs.
* gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes.
[native-inputs]: Add r-hgu133plus2-db and r-rbgl.
Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
31434cf56a
|
gnu: r-assertive-reflection: Add test input.
* gnu/packages/cran.scm (r-assertive-reflection)[native-inputs]: Add
r-testthat.
Change-Id: Id9a1bb673fe1644336639d4365d2f55b7478e02e
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
19656f1b63
|
gnu: r-assertive-models: Add test input.
* gnu/packages/cran.scm (r-assertive-models)[native-inputs]: Add r-testthat.
Change-Id: Idaadd19423d2a42ee8c3765ea0d5643dba430565
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
549c796092
|
gnu: r-assertive-matrices: Add test input.
* gnu/packages/cran.scm (r-assertive-matrices)[native-inputs]: Add r-testthat.
Change-Id: Ia91eee2a7c8597b32833f3245b31398c4c03b0d8
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
b92b540580
|
gnu: r-assertive-sets: Add test input.
* gnu/packages/cran.scm (r-assertive-sets)[native-inputs]: Add r-testthat.
Change-Id: I701a52e5cc9508b84f57452c81fb00c635331a3e
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
068a1cb2bb
|
gnu: r-assertive-numbers: Add test input.
* gnu/packages/cran.scm (r-assertive-numbers)[native-inputs]: Add r-testthat.
Change-Id: Ib76e20c5955e8e8da5bbad0740311032a28032f4
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
fca7fcb3f1
|
gnu: r-assertive-properties: Add test inputs.
* gnu/packages/cran.scm (r-assertive-properties)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: Idb11a7bfb85dc6f5a4e365149488dd1996e7d8a5
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
56ca7e67fa
|
gnu: r-snprelate: Add test inputs.
* gnu/packages/bioconductor.scm (r-snprelate)[native-inputs]: Add
r-biocgenerics and r-matrix.
Change-Id: Ie0f58fc3a94622a316213bc6f50d2f1e30199f1a
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
5eca4fff85
|
gnu: r-gwastools: Disable tests.
* gnu/packages/bioconductor.scm (r-gwastools)[arguments]: Disable tests.
Change-Id: Ie5a0d07995d54c5824dde99cf3854e0c69aac2e8
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
14048ace46
|
gnu: r-affy: Disable tests.
* gnu/packages/bioconductor.scm (r-affy)[arguments]: Disable tests.
Change-Id: Iad8b990c573e417d611c3198110d6dc42deb5e2b
|
2024-12-03 16:59:38 +01:00 |
|
Ricardo Wurmus
|
09b42fdeed
|
gnu: r-seqarray: Add test inputs.
* gnu/packages/bioconductor.scm (r-seqarray)[native-inputs]: Add r-digest,
r-matrix, and r-variantannotation.
Change-Id: Iea288da4b74c575c28187353d8235700c5595c46
|
2024-12-03 16:59:38 +01:00 |
|