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148150 commits

Author SHA1 Message Date
Ricardo Wurmus
cb155d6888
gnu: Add r-beepr.
* gnu/packages/cran.scm (r-beepr): New variable.

Change-Id: I57c31192998960f915f405bc82f66413e650f7aa
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
48216987dc
gnu: Add r-audio.
* gnu/packages/cran.scm (r-audio): New variable.

Change-Id: I9a4e49aae1510af81d512ee9f0bfb4fab006b345
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
40c987b6ba
gnu: Add r-rpushbullet.
* gnu/packages/cran.scm (r-rpushbullet): New variable.

Change-Id: I7f7e06e55bdefe6df19ec9f4890e12fa74d83c90
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
b9faa2d7ce
gnu: r-ibreakdown: Disable tests.
* gnu/packages/cran.scm (r-ibreakdown)[arguments]: Disable tests.

Change-Id: Ia0d573ecdd12e68689b330d9c2e1899e8a3515f8
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
575b5fd3f9
gnu: r-partr2: Add missing inputs.
* gnu/packages/cran.scm (r-partr2)[native-inputs]: Add r-furrr and r-future.

Change-Id: Ie4c9cc7bf8330cffa3a1f83f960ccf8a290ae942
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
5485e3ebeb
gnu: r-trnadbimport: Add missing input.
* gnu/packages/bioconductor.scm (r-trnadbimport)[native-inputs]: Add
r-httptest.

Change-Id: Ib654aa76d9a960c3d6cbc50264536af400bfd3e5
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
37e087dbfc
gnu: r-ingredients: Disable tests.
* gnu/packages/cran.scm (r-ingredients)[arguments]: Disable tests.

Change-Id: I8e97f856f3b089bd6e9c04f75d3b61556d7f3f07
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
60e33f3a40
gnu: r-dropbead: Disable tests.
* gnu/packages/bioinformatics.scm (r-dropbead)[native-inputs]: Add
r-data-table.
[arguments]: Disable tests.

Change-Id: I48c74a7b4253695ab5c877f6f1cebdca6ed42cb7
2024-12-03 10:54:20 +01:00
Ricardo Wurmus
7305c6ece7
gnu: r-sleuth: Disable tests.
* gnu/packages/bioinformatics.scm (r-sleuth)[native-inputs]: Add r-testthat.
[arguments]: Disable tests.

Change-Id: Ib060eb18f8964212eb38b7025a35c16f0aca97b9
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
7992d91de4
gnu: r-citr: Add missing input.
* gnu/packages/cran.scm (r-citr)[native-inputs]: Add r-testthat.

Change-Id: Ie6e1ee1513354407ab77df15b475565ede52134d
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
8d0eb5a0f9
gnu: r-rbokeh: Add missing input.
* gnu/packages/cran.scm (r-rbokeh)[native-inputs]: Add r-testthat.

Change-Id: Icaa91d29d91b9cf05a0b6da457332d5283936633
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
6a350a2556
gnu: r-rxnat: Add missing inputs.
* gnu/packages/cran.scm (r-rxnat)[native-inputs]: Add r-testthat.

Change-Id: If18efa654f8b1c85655a4d3f403a796e0613b698
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
c1b4fb5d51
gnu: r-ggsankey: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-ggsankey)[native-inputs]: Add r-testthat.

Change-Id: Iaafb75cc47e89a4a25232003d410f98c304ff021
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
59f153f690
gnu: r-languageserver: Add missing inputs.
* gnu/packages/statistics.scm (r-languageserver)[native-inputs]: Add r-mockery
and r-testthat.

Change-Id: I8e1d597a32fbec93a34b13943d879ff08050d1be
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
ebff90f017
gnu: r-streamgraph: Add missing input.
* gnu/packages/bioinformatics.scm (r-streamgraph)[native-inputs]: Add
r-testthat.

Change-Id: I1209a467c5a966c916f0d0416c6c1e283ae9226d
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
99085d8fe4
gnu: r-signac: Add missing input.
* gnu/packages/bioinformatics.scm (r-signac)[native-inputs]: Add r-testthat.

Change-Id: I0aacabf77171903cca2bc0f443f77e479b6331b2
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
3e3234598f
gnu: r-flexsurv: Add missing inputs.
* gnu/packages/cran.scm (r-flexsurv)[native-inputs]: Add r-broom and r-covr.

Change-Id: I5b833f146f13cc708734fbf7ecda890865cf18aa
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
4a94c2d29d
gnu: r-covr: Add missing inputs.
* gnu/packages/cran.scm (r-covr)[native-inputs]: Add r-dt, r-htmltools,
r-memoise, r-mockery, r-rstudioapi, and r-xml2.

Change-Id: Id328c561e454942230577f0482fed692d5080328
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
cbc86f28f6
gnu: r-anvil: Add missing input.
* gnu/packages/bioconductor.scm (r-anvil)[native-inputs]: Add r-testthat.

Change-Id: Id8cc0f631a7923204d0778d3e2da1b15c7d4fc68
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
988bbc1753
gnu: r-caret: Add missing inputs.
* gnu/packages/cran.scm (r-caret)[native-inputs]: Add r-fastica, r-mlmetrics,
and r-themis.

Change-Id: Ie165ff3c0c39146f12ea5018e8b5fc07e3d5cc26
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
5c13925cd2
gnu: Add r-themis.
* gnu/packages/cran.scm (r-themis): New variable.

Change-Id: I647994ad7e0b377130bccb08790acf3b55dd9005
2024-12-03 10:54:19 +01:00
Ricardo Wurmus
d014a0f97f
gnu: Add r-rose.
* gnu/packages/cran.scm (r-rose): New variable.

Change-Id: I403f1ca3bd7d9d5bf13045e9e6f1a1809f3622d9
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
1b081b3d69
gnu: Add r-mlmetrics.
* gnu/packages/cran.scm (r-mlmetrics): New variable.

Change-Id: I62509d35b334033054049dbc62d1fce7c9d47e48
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
d82564a201
gnu: r-biobroom: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biobroom)[native-inputs]: Add r-deseq2 and
r-edger.

Change-Id: I231026845896b2162d34724ba405a2f5bbacc56e
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
52958c36af
gnu: r-enhancedvolcano: Add missing input.
* gnu/packages/bioconductor.scm (r-enhancedvolcano)[native-inputs]: Add
r-biocgenerics.

Change-Id: I416f27e0e0f2e0c237e29f9ca6b5edeccebbec76
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
1fb7329c1e
gnu: r-biocset: Add missing inputs.
* gnu/packages/bioconductor.scm (r-biocset)[native-inputs]: Add r-gseabase and
r-org-hs-eg-db.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I062af0403952e209b07488afa5b939bee60cadc0
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
f508cc33af
gnu: r-graphite: Disable tests.
* gnu/packages/bioconductor.scm (r-graphite)[native-inputs]: Add r-checkmate.
[arguments]: Disable tests.

Change-Id: Ia69467f2c1516ff3510a3e7ae422f9d031fecc1f
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
8661cd0825
gnu: r-gseabase: Add missing inputs.
* gnu/packages/bioconductor.scm (r-gseabase)[native-inputs]: Add r-go-db,
r-hgu95av2, r-hgu95av2-db, r-org-hs-eg-db, and r-runit.

Change-Id: I302caa7aa57487009272a3c361bd864a474afcf2
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
3e18cf8a0a
gnu: Add r-hgu95av2.
* gnu/packages/bioconductor.scm (r-hgu95av2): New variable.

Change-Id: Ibbadbfd247755c54e56cc22ec59172c4da098bdf
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
10980be68b
gnu: r-riboseqr: Add missing input.
* gnu/packages/bioconductor.scm (r-riboseqr)[native-inputs]: Add r-biocstyle.

Change-Id: I969eb0cea1051578d785a04adb5fd7770b18ab62
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
2a93c53045
gnu: r-survey: Add missing inputs.
* gnu/packages/cran.scm (r-survey)[native-inputs]: Add r-aer, r-mass, and
r-rsqlite.
[arguments]: Add phase 'set-HOME.

Change-Id: I6cac861edb1672cbcad3a76846223ba812224681
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
464fe96b83
gnu: r-biocviews: Disable tests.
* gnu/packages/bioconductor.scm (r-biocviews)[arguments]: Disable tests.

Change-Id: Ic66fd71421b041098da31a38d7101b1bf013110a
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
21797e4d29
gnu: r-boruta: Add missing inputs.
* gnu/packages/cran.scm (r-boruta)[native-inputs]: Add r-rferns.

Change-Id: I04475e0d30040203f958ee473d5bb1e3e23634d8
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
44017fab1b
gnu: r-anf: Disable tests.
* gnu/packages/bioconductor.scm (r-anf)[arguments]: Disable tests.

Change-Id: Id30bf651b086860224d2d52cb59d50221311736b
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
005b0838bb
gnu: r-flowcore: Disable tests.
* gnu/packages/bioconductor.scm (r-flowcore)[arguments]: Disable tests.

Change-Id: If8c97ed20a782357cc2c01e2bdd361d59419c260
2024-12-03 10:54:18 +01:00
Ricardo Wurmus
10b6cddbaf
gnu: Add r-rferns.
* gnu/packages/cran.scm (r-rferns): New variable.

Change-Id: I1aa80f3b5abb98c7bee5903a640cfd7b45ef1196
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
8c8de24a53
gnu: r-bedr: Disable tests.
* gnu/packages/cran.scm (r-bedr)[arguments]: Disable tests.

Change-Id: Ib0057f60a794b9cd0d52f5c4cd92079b74808824
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
c8ccf92340
gnu: r-bumphunter: Add missing inputs.
* gnu/packages/bioconductor.scm (r-bumphunter)[native-inputs]: Add
r-doparallel, r-runit, and r-txdb-hsapiens-ucsc-hg19-knowngene.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I86c3515ad5ad124742b244c085f0084342680168
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
b39316de45
gnu: r-batchelor: Add missing inputs.
* gnu/packages/bioconductor.scm (r-batchelor)[native-inputs]: Add r-bluster
and r-scran.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: Id23065c7b4b8209ddd058e1a68a88b2142df1bd1
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
57054b7475
gnu: r-model4you: Add missing inputs.
* gnu/packages/cran.scm (r-model4you)[native-inputs]: Add r-plyr,
r-psychotools, r-strucchange, and r-th-data.

Change-Id: Ib79c42068c1d839c9ce59f58d860ae22727fe547
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
89cf683184
gnu: r-singler: Add missing inputs.
* gnu/packages/bioconductor.scm (r-singler)[native-inputs]: Add
r-scuttle and r-singlecellexperiment.

Change-Id: I1629f5b206a0fbc8035b1d2a31315570933b9375
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
4291e7cd11
gnu: r-spatialexperiment: Add missing inputs.
* gnu/packages/bioconductor.scm (r-spatialexperiment)[native-inputs]: Add
r-dropletutils.
[arguments]: Add phase 'set-HOME.

Change-Id: Ie08e76e22d6bf0410da2f590ac5f388f316e9111
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
6fbd1b1f07
gnu: r-abbyyr: Add missing inputs.
* gnu/packages/cran.scm (r-abbyyr)[native-inputs]: Add r-knitr and r-testthat.

Change-Id: I22f32e7ea4f3aee0e4a8d1ba486495ea22789e0e
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
97dc83e636
gnu: r-psupertime: Add missing input.
* gnu/packages/bioinformatics.scm (r-psupertime)[native-inputs]: Add
r-testthat.

Change-Id: I9993547e2e757b4218c2229495a7eaa0c8fecbe2
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
65e3c3fad1
gnu: r-demuxmix: Add missing input.
* gnu/packages/bioinformatics.scm (r-demuxmix)[native-inputs]: Add r-testthat.

Change-Id: Ia09b929b4d5bb521d58fb74f17f1ac91a4d44a60
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
beacf93206
gnu: r-cmdstanr: Add missing input.
* gnu/packages/bioinformatics.scm (r-cmdstanr)[native-inputs]: Add
r-testthat.

Change-Id: Idd81b903e9e9a8308703c9ee8dc5583a04854678
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
77cd472062
gnu: r-asset: Add missing input.
* gnu/packages/bioconductor.scm (r-asset)[native-inputs]: Add r-biocgenerics.

Change-Id: Iecfe6093665033d41b43d0ead6fa9d3f3fd54d81
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
a2153801fb
gnu: r-savr: Disable vignettes.
* gnu/packages/bioconductor.scm (r-savr)[native-inputs]: Add r-testthat.
[arguments]: Disable vignettes.

Change-Id: If5a5928d3f7fde5d3360184b229894d92b715d03
2024-12-03 10:54:17 +01:00
Ricardo Wurmus
3b0b56b6ff
gnu: r-lemon: Add missing input.
* gnu/packages/cran.scm (r-lemon)[native-inputs]: Add r-vdiffr.

Change-Id: If7cf93031ea6a97176d7c39751aa8d6fd0858ca5
2024-12-03 10:54:16 +01:00
Ricardo Wurmus
e9dc86d789
gnu: r-sqldf: Add missing input.
* gnu/packages/cran.scm (r-sqldf)[native-inputs]: Add r-svunit.

Change-Id: Id62cb9aec38c547ca08f0b9ca57c190d68ef232f
2024-12-03 10:54:16 +01:00