mirror/guix
1
0
Fork 0
mirror of https://git.savannah.gnu.org/git/guix.git synced 2025-02-07 19:39:34 +01:00
Code Issues Projects Releases Packages Wiki Activity Actions
152746 commits 90 branches 36 tags 607 MiB
Commit graph

152746 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus
9f91ffca14
gnu: python-astropy-minimal: Add missing input. 
* gnu/packages/astronomy.scm (python-astropy-minimal)[native-inputs]: Add
python-wheel.

Change-Id: Idf51791c864f90d5805d3c9afa633b34ff0f3ae3
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
28a96a54b2
gnu: python-regions: Add missing input. 
* gnu/packages/astronomy.scm (python-regions)[native-inputs]: Add
python-wheel.

Change-Id: I482877ec96fd96251ad633750572db721f0d7c37
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
47c94dbf7b
gnu: python-astropy-healpix: Add missing input. 
* gnu/packages/astronomy.scm (python-astropy-healpix)[native-inputs]: Add
python-wheel.

Change-Id: I16e53a22f402d853d1c1939db4b28a49af69e4c2
 2025-01-16 10:17:33 +01:00
Ricardo Wurmus
3dcb2f8427
gnu: python-asgi-csrf: Make compatibly with httpx 0.28.0+. 
* gnu/packages/python-web.scm (python-asgi-csrf)[arguments]: Add phase
'compatibility.

Change-Id: Ifa3604fd63e9045e3f060d6b57eeeab8afd182d3
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
cad2b068dc
gnu: python-mathics-pygments: Add missing inputs. 
* gnu/packages/maths.scm (python-mathics-pygments)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Iab1194635b8199cb681384d02f3a7dd25cbaac86
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
97b66aa79c
gnu: python-mathicsscript: Add missing inputs. 
* gnu/packages/maths.scm (python-mathicsscript)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Icb6f613afefe2074bc6e84cab2573474e74643bd
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
56aa3a00b2
gnu: python-metpy: Add missing inputs. 
* gnu/packages/geo.scm (python-metpy)[native-inputs]: Add python-setuptools
and python-wheel.

Change-Id: Iea093561b5ff4b9f7206de0ee82de36088c6d695
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
a96e3e0822
gnu: python-mathics-django: Add missing inputs. 
* gnu/packages/maths.scm (python-mathics-django)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I45522d75fed2492e5d2bb2d38cc430c84b2b2551
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
4116c5356d
gnu: python-columnize: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-columnize)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I16e4c74ad5c158e9e45c2b1f930f5abb72f7f203
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
e036aa93a0
gnu: python-term-background: Add missing input. 
* gnu/packages/python-xyz.scm (python-term-background)[native-inputs]: Remove
python-pkginfo; add python-wheel.

Change-Id: I9720aaad30294c532e9dcebd9247320e22e59866
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
42552ae0f7
gnu: scregseg: Patch for numpy compatibility. 
* gnu/packages/bioinformatics.scm (scregseg)[arguments]: Add phase
'compatibility.

Change-Id: I738d675c10acdbae7d40b3f806703ba8f7936a19
 2025-01-16 10:17:32 +01:00
Ricardo Wurmus
22b9dbbe7f
gnu: python-voila: Update to 0.5.8. 
* gnu/packages/jupyter.scm (python-voila): Update to 0.5.8.
[build-system]: Use pyproject-build-system.
[arguments]: Disable one test; remove phase 'relax-requirements; remove custom
'check phase; add phases 'prepare-css and 'install-extensions.
[native-inputs]: Add python-hatchling, python-hatch-jupyter-builder, and a
number of additional origins.

Change-Id: Id09a8cec5fedc77596315ffc662f0789a84e179a
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
f83ecd5742
gnu: python-episcanpy: Add missing input. 
* gnu/packages/bioinformatics.scm (python-episcanpy)[native-inputs]: Add
python-wheel.

Change-Id: Iba4ac520faf00e3db64df3532752b1de3eec1bc6
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
498bfad1a9
gnu: python-celltypist: Add missing input. 
* gnu/packages/bioinformatics.scm (python-celltypist)[native-inputs]: Add
python-wheel.

Change-Id: Ife136efe1d6f734951dde25e950148d3d7057d64
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
744404ddfb
gnu: python-metacells: Update to 0.9.5. 
* gnu/packages/bioinformatics.scm (python-metacells): Update to 0.9.5.
[native-inputs]: Add python-pandas-stubs and python-setuptools.

Change-Id: I25d28d0ebbb689c2561e25fec94cf4911c7f5158
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
a9b1814ec8
gnu: python-scanpy: Patch anndata version check. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Add phase
'patch-version-check.

Change-Id: I0d2262197ae05c785fc65bd22e8052764434cab3
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
7a640899a2
gnu: python-metacells: Add missing input. 
* gnu/packages/bioinformatics.scm (python-metacells)[native-inputs]: Add
python-wheel.

Change-Id: I5ca117071b43bad1942f499795001fe8bc641546
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
483bcd732f
gnu: python-fastcluster: Add missing inputs. 
* gnu/packages/python-science.scm (python-fastcluster)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I2fa034054f5183e04c2f1e673f841f07799a7b94
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
beb8a1da47
gnu: python-apscheduler: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-apscheduler)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I777d0c0d2c758d7ec3385a11432c3e9cc16877f1
 2025-01-16 10:17:31 +01:00
Ricardo Wurmus
74e04ab9fd
gnu: python-cvxpy: Add missing input. 
* gnu/packages/python-science.scm (python-cvxpy)[native-inputs]: Add
python-wheel.

Change-Id: I66f4f504a0a4101abc845b7b7d0a0fccbd6b91b9
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
6318f27f9c
gnu: python-scikit-survival: Add missing input. 
* gnu/packages/python-science.scm (python-scikit-survival)[native-inputs]: Add
python-setuptools.

Change-Id: I52e98c787cec226590f21c98e4287a41fb41f3d3
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
334707c78f
gnu: python-qdldl: Add missing input. 
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add
python-wheel.

Change-Id: I6bca560b20a9c259eae95c09edcf10ead685ec21
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
9afceff50e
gnu: python-osqp: Add missing inputs. 
* gnu/packages/python-science.scm (python-osqp)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ief43d97442a98935dea1499c67e022e9beb5359e
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
0d80ffd4dc
gnu: python-scikit-learn-extra: Disable one test. 
* gnu/packages/machine-learning.scm (python-scikit-learn-extra)
[arguments]: Disable one test.

Change-Id: Idee17402250a55ca564724f00550ef36664982f6
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
48131cec81
gnu: python-scikit-fuzzy: Add missing inputs. 
* gnu/packages/python-science.scm (python-scikit-fuzzy)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Idbaf5fa622b3584f8fd348ec0783605936d3bf41
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
a3657b1a98
gnu: python-scikit-allel: Update to 1.3.13. 
* gnu/packages/python-science.scm (python-scikit-allel): Update to 1.3.13.
[propagated-inputs]: Remove python-click.
[native-inputs]: Remove python-scipy.

Change-Id: I3c29bd3d9f87d0866da747c344740bad71cae1c3
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
aed3995e60
gnu: python-resolvelib: Update to 1.1.0b1. 
* gnu/packages/python-xyz.scm (python-resolvelib): Update to 1.1.0b1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ida8eb599bcfc02e84fc95ac276fba4ba217a6511
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
c5b8e1429d
gnu: python-resampy: Update to 0.4.3. 
* gnu/packages/audio.scm (python-resampy): Update to 0.4.3.
[arguments]: Remove.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I79d0a460d4646c5fde3aec9314d9ccc6380002de
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
5d2d250333
gnu: python-pytest-tornado5: Add missing inputs. 
* gnu/packages/check.scm (python-pytest-tornado5)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I0b64ac5f3e50893cb3fab518c9779d2cd7b9c6a9
 2025-01-16 10:17:30 +01:00
Ricardo Wurmus
31eb69204f
gnu: Remove python-pathlib. 
This package is obsolete, the module it provides is part of the standard
library, and the package has no users.

* gnu/packages/python-xyz.scm (python-pathlib): Remove variable.

Change-Id: I8c724ba7b62ad5602f6abdb4e5fdaf2806180ab5
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
8fba804af0
gnu: rust-jiter-0.2: Add missing input. 
* gnu/packages/crates-io.scm (rust-jiter-0.2)[native-inputs]: Add
python-minimal-wrapper.

Change-Id: Ieab1e0a1e3329528fc21a160669e7ea8376c0e5f
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
5a89243348
gnu: python-cachecontrol-0.11: Add missing inputs. 
* gnu/packages/python-web.scm (python-cachecontrol-0.11)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I02091636a09a92093af109b044614fe617a5dd4c
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
e83f4e980e
gnu: python-liana-py: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.4.0.
[arguments]: Adjust disabled tests.

Change-Id: I9245285e2d043b5e7cbce5fb95a30982cd981597
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
3b88afa1d9
gnu: python-mizani: Add missing input. 
* gnu/packages/python-xyz.scm (python-mizani)[native-inputs]: Add
python-wheel.

Change-Id: I9a1a7a4ee38db7a48e14069efb2b7b97dad32a80
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
a226723f23
gnu: python-decoupler-py: Add missing input. 
* gnu/packages/bioinformatics.scm (python-decoupler-py)[native-inputs]: Add
python-wheel.

Change-Id: I37b8162e0dde4513b3a6f94455315489d7d08499
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
03239c399c
gnu: python-cell2cell: Add missing input. 
* gnu/packages/bioinformatics.scm (python-cell2cell)[native-inputs]: Add
python-wheel.

Change-Id: I79015fa48c976489d4c1182cb4506aae139325ad
 2025-01-16 10:17:29 +01:00
Ricardo Wurmus
046f2594ab
gnu: python-gseapy: Add missing input. 
* gnu/packages/bioinformatics.scm (python-gseapy)[native-inputs]: Add
python-wheel.

Change-Id: I0ce3d3aeb5aa3fb1ab3f2aa524b066738cf9046a
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
06990f27c2
gnu: python-cattrs: Disable failing test. 
* gnu/packages/python-xyz.scm (python-cattrs)[arguments]: Disable one more
test.

Change-Id: I8296abaa2faa745404354cb26f0d08024e7960c8
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
72b411475a
gnu: python-mudata: Update to 0.3.1. 
* gnu/packages/bioinformatics.scm (python-mudata): Update to 0.3.1.
[arguments]: Add phase 'pretend-version.
[native-inputs]: Remove python-flit-core; add python-hatch-vcs and
python-hatchling.

Change-Id: I87b8dc6ec557e0ca69930d82db7d6e64727228e9
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
310a895029
gnu: python-locust: Disable some more tests. 
* gnu/packages/benchmark.scm (python-locust)[arguments]: Update list of
disabled tests.

Change-Id: I3d6d070a1cc771c006530454b0bb9506287bbe6b
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
d5d29afa84
gnu: python-locust: Update to 2.32.5. 
* gnu/packages/benchmark.scm (python-locust): Update to 2.32.5.
[source]: Get from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Update list of disabled tests; remove custom 'check phase; add
phase 'fix-version.
[propagated-inputs]: Remove python-flask-basicauth and python-roundrobin; add
python-flask-login, python-setuptools, and python-tomli.
[native-inputs]: Add nss-certs-for-test, python-poetry-core,
and python-poetry-dynamic-versioning; remove python-mock and
python-setuptools-scm.

Change-Id: I5e7203d48eda9279531c9d3060d81d91974dee6e
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
9b67859ec7
gnu: python-flask-assets: Update to 2.1.0-1.62efd23. 
* gnu/packages/python-web.scm (python-flask-assets): Update to
2.1.0-1.62efd23.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add nss-certs-for-test, python-pytest, python-setuptools, and
python-wheel.

Change-Id: I8c3dedb39d4cc1e51d9c3ef9fe9298586f871736
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
a6adb438dd
gnu: python-webassets: Fix build. 
* gnu/packages/python-web.scm (python-webassets)[arguments]: Delete broken
tests; run tests with nosetests.
[propagated-inputs]: Add python-pyyaml.
[native-inputs]: Remove python-pytest.

Change-Id: Iee1a38b02770259d11e4c7f6eff5d25c6be52ff9
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
9f01de8663
gnu: Remove python-flask-basicauth. 
This project is abandoned and has test failures that indicate that it doesn't
actually work properly anymore.

* gnu/packages/python-web.scm (python-flask-basicauth): Remove variable.

Change-Id: I828bd5409d71d45c5549e74deba3edecbfac4572
 2025-01-16 10:17:28 +01:00
Ricardo Wurmus
a07a35714c
gnu: python-flask-login: Update to 0.6.3. 
* gnu/packages/python-web.scm (python-flask-login): Update to 0.6.3.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ie1dc0ffccc11172e21d0013d84c064b8c2793e5f
 2025-01-16 10:17:27 +01:00
Ricardo Wurmus
f50565b192
gnu: python-flask-htpasswd: Update to 0.5.0. 
* gnu/packages/python-web.scm (python-flask-htpasswd): Update to 0.5.0.
[build-system]: Use pyproject-build-system.
[arguments]: Disable tests.

Change-Id: I24ec759fcfbfef3b64f5ca730ed43bf48690288b
 2025-01-16 10:17:27 +01:00
Ricardo Wurmus
7578ea008f
gnu: python-scanpy: Update to 1.10.4. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.10.4.
[arguments]: Update list of disabled tests; rename phase 'discover-anndata to
'add-anndata-source.
[native-inputs]: Add python-pytest-mock.

Change-Id: I409678c67d15f3d3e4147be68c7a987c0e095d23
 2025-01-16 10:17:27 +01:00
Ricardo Wurmus
ec247999df
gnu: python-legacy-api-wrap: Update to 1.4.1. 
* gnu/packages/python-xyz.scm (python-legacy-api-wrap): Update to 1.4.1.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-coverage, python-hatch-vcs, python-hatchling, and
python-pytest.
[propagated-inputs]: Remove python-get-version, python-pytest,
python-pytest-black, python-pytest-cov, and python-setuptools.

Change-Id: I56ccdc6c9fd8b5e6bcbfcf9255f02949e8f1e705
 2025-01-16 10:17:27 +01:00
Ricardo Wurmus
228b5abbf7
gnu: python-omnipath: Update to 1.0.8-0.3d16134. 
* gnu/packages/python-web.scm (python-omnipath): Update to 1.0.8-0.3d16134.
[source]: Fetch from git repository.
[arguments]: Remove phase 'relax; update list of disabled tests; add phase
'pretend-version.
[native-inputs]: Add nss-certs-for-test.

Change-Id: I9e980702ac8e5662971a9c4bb88a5789758b48ed
 2025-01-16 10:17:27 +01:00
Ricardo Wurmus
856485da37
gnu: python-pypika-tortoise: Add missing input. 
* gnu/packages/databases.scm (python-pypika-tortoise)[native-inputs]: Add
python-setuptools.

Change-Id: Ibe96738292a0948cae2add596fe76ee349c9dfeb
 2025-01-16 10:17:27 +01:00