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Author SHA1 Message Date
Jakob Kirsch
c3ab9a16b7
gnu: Add hyprgraphics. 
* gnu/packages/cpp.scm (hyprgraphics): New variable.

Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Change-Id: I592fdb92f136f2d05c09897fea7c554c30131bec
 2025-01-01 15:15:14 -05:00
Ricardo Wurmus
d43f238638
gnu: python-hmmlearn: Add missing inputs. 
* gnu/packages/machine-learning.scm (python-hmmlearn)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Idd474162534bf8dbbc6e4a9772a2748862e0b045
 2025-01-01 20:15:45 +01:00
Ricardo Wurmus
100c75620a
gnu: python-scanpy: Ignore plotting tests. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Also ignore
tests from test_plotting.py.

Change-Id: I5d2ebb3764e57c5f348be2b3555db99a2ee6ee4f
 2025-01-01 19:54:32 +01:00
Ricardo Wurmus
9ce6e9f94a
gnu: python-scanpy: Use more test-flags. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Remove phase
'delete-bad-tests and use #:test-flags instead; add phase 'discover-anndata.

Change-Id: Idb5bd59a2bba968fbec820603938802cf9443bad
 2025-01-01 19:53:32 +01:00
Ricardo Wurmus
333b5b1fae
gnu: python-jupyter-server: Do not propagate old dataclasses. 
* gnu/packages/jupyter.scm (python-jupyter-server)[propagated-inputs]: Replace
python-anyio with python-anyio/without-dataclasses.

Change-Id: I20737b7d3199b34b155838c75bd19de82d78e1c5
 2025-01-01 18:14:34 +01:00
Ricardo Wurmus
7eea9b7d55
gnu: Add python-anyio/without-dataclasses. 
* gnu/packages/python-xyz.scm (python-anyio/without-dataclasses): New variable.

Change-Id: I40ae9aa7a85f0fe7642dc3b75f3ef9cde17f064f
 2025-01-01 18:11:44 +01:00
Ricardo Wurmus
151865ada4
gnu: python-zarr: Disable one test. 
* gnu/packages/python-xyz.scm (python-zarr)[arguments]: Disable one more test.

Change-Id: I3733078b878fa60c4e382dfca39fcef64cefa1ae
 2025-01-01 17:26:36 +01:00
Ricardo Wurmus
4592ba3d6a
gnu: python-awkward-cpp: Relax dependency on python-scikit-build-core. 
* gnu/packages/python-xyz.scm (python-awkward-cpp)[arguments]: Add phase
'relax-requirements.

Change-Id: I3d4f647f6e5eecd343de4219baf20c6e38a2a5a0
 2025-01-01 17:24:54 +01:00
Ricardo Wurmus
34a279e0da
gnu: python-hicmatrix: Work around defect in python-tables. 
* gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2.
[arguments]: Add phase 'find-blosc2.

Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
 2025-01-01 15:29:14 +01:00
Ricardo Wurmus
4b38f39022
gnu: jupyter: Skip sanity check. 
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (jupyter)[arguments]: Delete 'sanity-check
phase.

Change-Id: I715d9161d7f23c1f72125aea8b4c0e1bb5490b1e
 2025-01-01 15:14:55 +01:00
Ricardo Wurmus
a39c4b7e38
gnu: python-notebook: Skip sanity check. 
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (python-notebook)[arguments]: Delete
'sanity-check phase.

Change-Id: I23d69c852fd9de98c010cce82b09ac541c0e2121
 2025-01-01 15:14:34 +01:00
Ricardo Wurmus
cbc6fa9800
gnu: python-nbclassic: Skip sanity check. 
This is temporary and will be removed on the python-team branch.

* gnu/packages/jupyter.scm (python-nbclassic)[arguments]: Delete 'sanity-check
phase.

Change-Id: I8a3190a849d192d9c7f1b2e903b55705622671f8
 2025-01-01 15:00:28 +01:00
Ricardo Wurmus
44e7540663
gnu: python-zarr: Update to 2.18.4. 
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.18.4.
[arguments]: Add phase 'set-version.
[propagated-inputs]: Add python-ipywidgets, python-notebook, python-numpydoc,
and python-pydata-sphinx-theme.
[native-inputs]: Remove python-fsspec, python-h5py, python-pytest-timeout, and
python-setuptools-scm; add python-sphinx, python-sphinx-copybutton,
python-sphinx-design, python-sphinx-issues, and python-setuptools.

Change-Id: I707da0087b8aa6cf57be4e5dd9019b24620f101f
 2025-01-01 14:43:04 +01:00
Ricardo Wurmus
f492431b40
gnu: python-awkward: Update to 2.7.2. 
* gnu/packages/python-xyz.scm (python-awkward): Update to 2.7.2.
[arguments]: Skip three broken tests.

Change-Id: Ifdfcda9c57b9b27e9c3b5e0b05c7896d552b30cd
 2025-01-01 14:36:36 +01:00
Ricardo Wurmus
f2ef1fdcc1
gnu: python-awkward-cpp: Update to 43. 
* gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 43.
[propagated-inputs]: Remove python-importlib-resources.

Change-Id: I7201a31d49287f9a656f53fff953ebb593620712
 2025-01-01 14:36:26 +01:00
Ricardo Wurmus
6b692fc0f9
gnu: python-pybedtools: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.10.0.
[arguments]: Use #:test-flags to disable one test instead of patching test
files in 'disable-broken-tests phase; add new phases 'fix-references and
'build-extensions.
[propagated-inputs]: Remove python-matplotlib; add kentutils, python-numpy,
python-pandas, and python-psutil.
[inputs]: Add zlib.
[native-inputs]: Remove python-numpy, python-pandas, python-psutil,
python-six, and kentutils.

Change-Id: I62948b1f3169f93f752896fdf02d2887740e98cc
 2025-01-01 14:13:34 +01:00
Ricardo Wurmus
3c31650d18
gnu: python-upsetplot: Add missing inputs. 
* gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
 2025-01-01 14:11:52 +01:00
Yarl Baudig
41e192c922
gnu: pinebook-pro-image-type: augment partition offset. 
* gnu/system/images/pinebook-pro.scm: augment partition offset
to make room for the bootloader.

Change-Id: I91a3758243a13960165d40b94efe017e6e059a22
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:38:27 +01:00
Vinicius Monego
07a352738a
gnu: Add python-sphinx-inline-tabs. 
* gnu/packages/sphinx.scm (python-sphinx-inline-tabs): New variable.

Change-Id: I92516cdc404cdcaee74cb8cf19f255c049c43021
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:05 +01:00
vicvbcun
96b7e92a8f
gnu: pari-gp: Install galdata. 
* gnu/packages/algebra.scm (pari-galdata): New variable.
(pari-gp)[arguments]<#:phases>: Add phase "install-galdata".

Change-Id: Iaec77b0ab60d8ff59c8a36e7e0a7878b58742751
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: Id74aa6ce315df48a2d917baf1a436ba54b1b5185
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
2d0faf10ad
gnu: pari-gp: Use G-Expressions. 
* gnu/packages/algebra.scm (pari-gp)[arguments]: Use G-Expressions.  Unset
make-flags.

Change-Id: Id2be46acd67b474d6fdb8935070ffb243e87f920
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I7be07998e9e2d1fe9194d4af6a57537467f5e097
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
806d23693a
gnu: Add tachyon. 
* gnu/packages/graphics.scm (tachyon): New variable.

Change-Id: I57780c08c6b496e40459789d693b9b24fb4a9da8
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I5914afad8d293787b9898a229084e6c79fbe8911
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
3edd17ea51
gnu: Add palp. 
* gnu/packages/maths.scm (palp): New variable.

Change-Id: I37ee870858fef505999dfdc02d1955673366d718
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I853cbccca5c34355d9df74a3cbbd5f818a21ebb5
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
Vinicius Monego
9a7e36b4e1
gnu: Add gfan. 
* gnu/packages/maths.scm (gfan): New variable.

Change-Id: I3b4952ddfcaecac17ab29bb3cd2f56fc125ab763
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
Vinicius Monego
7bc6ec189e
gnu: Add sympow. 
* gnu/packages/maths.scm (sympow): New variable.

Change-Id: Iaeaea352f0a3a65a877b2845ecdc18856ded6d3c
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
Vinicius Monego
0de2caa2a2
gnu: Add python-lrcalc. 
* gnu/packages/algebra.scm (python-lrcalc): New variable.

Change-Id: Id174ecfa092786ca16fbde2be68e12af0b2d9af3
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
Vinicius Monego
ab81e930a4
gnu: Add python-pytz-deprecation-shim. 
* gnu/packages/time.scm (python-pytz-deprecation-shim): New variable.

Change-Id: I481ea9818444d9a14efcf7b11d44c68a5f2fec3f
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
5ae2849a68
gnu: Add sagemath-data-combinatorial-designs. 
* gnu/packages/sagemath.scm (sagemath-data-combinatorial-designs): New
variable.

Change-Id: Ib1ad3675256be1958427cd37a76bb5bdbf16fd12
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I758e22fabcc11ca0583ab899acc0c653a35c7f43
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
389dd532a6
gnu: Add sagemath-data-graphs. 
* gnu/packages/sagemath.scm (sagemath-data-graphs): New variable.

Change-Id: I7c537aac21f43a8712fd6d542551f78c3ebaec68
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I88f35ccf94cfe0d866ef57cb893844c8285d5138
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
df69b89c94
gnu: Add sagemath-data-polytopes-db. 
* gnu/packages/sagemath.scm (sagemath-data-polytopes-db): New variable.

Change-Id: I8dd6cbd0b71a01d817486882bec8f126dece7e36
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: Iada71a7939e5deadf6888af6c21621e5458622d1
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
Vinicius Monego
e5eea7d9cb
gnu: Add sagemath-data-conway-polynomials. 
* gnu/packages/sagemath.scm (sagemath-data-conway-polynomials): New variable.

Change-Id: Ia3a087b19a0ade5d927422bd365283d209df0863
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:02 +01:00
Artyom V. Poptsov
8b80a84d70
gnu: python-augeas: Fix build. 
* gnu/packages/augeas.scm (python-augeas): Fix build.
[native-inputs]: Add python-setuptools and python-wheel.  Sort alphabetically.

Change-Id: I4b8d31a3e673e9be6e6dd741cf32c6e016858b21
 2025-01-01 14:50:51 +03:00
宋文武
c943829ac7
gnu: xfce4-weather-plugin: Switch to git source. 
* gnu/packages/xfce.scm (xfce4-weather-plugin)[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[arguments]: Add "--enable-maintainer-mode" to configure-flags.
[home-page]: Set to docs.xfce.org.

Change-Id: I72bcdab8f58401347a2993172f07237082e0e80a
 2025-01-01 10:48:35 +08:00
宋文武
0b3ebac7ac
gnu: xfce4-wavelan-plugin: Update to 0.6.4. 
* gnu/packages/xfce.scm (xfce4-wavelan-plugin): Update to 0.6.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: Idc3e19f8c0f4b328096a1eebca0dd4272226376c
 2025-01-01 10:48:35 +08:00
宋文武
8183cf22bd
gnu: xfce4-verve-plugin: Update to 2.0.4. 
* gnu/packages/xfce.scm (xfce4-verve-plugin): Update to 2.0.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I778fdec57a65747938f542c22390b4ceb3cdb8db
 2025-01-01 10:48:35 +08:00
宋文武
4e9e63b09b
gnu: xfce4-timer-plugin: Update to 1.7.3. 
* gnu/packages/xfce.scm (xfce4-timer-plugin): Update to 1.7.3.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I4364e3e6a8c0b4d530a0f7df7514afc08cfc96b0
 2025-01-01 10:48:34 +08:00
宋文武
806f52961f
gnu: xfce4-time-out-plugin: Update to 1.1.4. 
* gnu/packages/xfce.scm (xfce4-time-out-plugin): Update to 1.1.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I5817989938128fef9a9b423e817515783b3017e2
 2025-01-01 10:48:34 +08:00
宋文武
ae491da847
gnu: xfce4-systemload-plugin: Update to 1.3.3. 
* gnu/packages/xfce.scm (xfce4-systemload-plugin): Update to 1.3.3.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I1b970db60e4a61ca7ef5a99cec70bcbf23c21e56
 2025-01-01 10:48:34 +08:00
宋文武
c3cfe5966d
gnu: xfce4-stopwatch-plugin: Update to 0.5.2. 
* gnu/packages/xfce.scm (xfce4-stopwatch-plugin): Update to 0.5.2.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I2656b9a43041215fda5f6e21c86a8b35666bcde9
 2025-01-01 10:48:34 +08:00
宋文武
1611abbdbb
gnu: xfce4-statusnotifier-plugin: Superseded by xfce4-panel. 
* gnu/packages/xfce.scm (xfce4-statusnotifier-plugin)[home-page]: Set to docs.xfce.org.
[properties]: Mark as superseded by xfce4-panel.

Change-Id: I190bec4d575deb2b56f1753b90f7050e7b9ff48f
 2025-01-01 10:48:34 +08:00
宋文武
abddc83687
gnu: xfce4-smartbookmark-plugin: Update to 0.5.3. 
* gnu/packages/xfce.scm (xfce4-smartbookmark-plugin): Update to 0.5.3.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: Iacda6cae5eb7a8537cafbd601541295a8c2391de
 2025-01-01 10:48:34 +08:00
宋文武
f159c7f582
gnu: xfce4-places-plugin: Update to 1.8.4. 
* gnu/packages/xfce.scm (xfce4-places-plugin): Update to 1.8.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[inputs]: Remove gtk+-2.
[home-page]: Set to docs.xfce.org.

Change-Id: I4ba0a7044ccc01a0fe72feb9f12a57286c33675f
 2025-01-01 10:48:34 +08:00
宋文武
3bfe1e232e
gnu: xfce4-netload-plugin: Update to 1.4.2. 
* gnu/packages/xfce.scm (xfce4-netload-plugin): Update to 1.4.2.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: Ife87b33390b2cc91b3250d1616924a32d24894e7
 2025-01-01 10:48:34 +08:00
宋文武
dfc78b4261
gnu: xfce4-mount-plugin: Update to 1.1.7. 
* gnu/packages/xfce.scm (xfce4-mount-plugin): Update to 1.1.7.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I3187bbb9e1d62eb736812ba988882aeddc1a0750
 2025-01-01 10:48:34 +08:00
宋文武
5d2c185b17
gnu: xfce4-mpc-plugin: Update to 0.5.5. 
* gnu/packages/xfce.scm (xfce4-mpc-plugin): Update to 0.5.5.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: Ia98235afda9f6c8e0b6a19b790ab0eb785f95fce
 2025-01-01 10:48:34 +08:00
宋文武
3352848201
gnu: xfce4-mailwatch-plugin: Update to 1.3.2. 
* gnu/packages/xfce.scm (xfce4-mailwatch-plugin): Update to 1.3.2.
[native-inputs]: Add xfce4-dev-tools.
[inputs]: Add gnutls.
[home-page]: Set to docs.xfce.org.
[license]: Set to gpl2+.

Change-Id: Ibd49182530730030e00187a5dde62b3985e407ef
 2025-01-01 10:48:34 +08:00
宋文武
fdd9272385
gnu: xfce4-genmon-plugin: Update to 4.2.1. 
* gnu/packages/xfce.scm (xfce4-genmon-plugin): Update to 4.2.1.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I278f39ded40fc528de9aedc2e5c6110b0a85603f
 2025-01-01 10:48:34 +08:00
宋文武
0b114983d9
gnu: xfce4-fsguard-plugin: Update to 1.1.4. 
* gnu/packages/xfce.scm (xfce4-fsguard-plugin): Update to 1.1.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: Ie66a6f6bab34f8861c0633224555377c9205ccd0
 2025-01-01 10:48:34 +08:00
宋文武
9e81207562
gnu: xfce4-diskperf-plugin: Update to 2.7.1. 
* gnu/packages/xfce.scm (xfce4-diskperf-plugin): Update to 2.7.1.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: If4e178843b0f2a41c13e2f94971dd3d09a62a3a2
 2025-01-01 10:48:34 +08:00
宋文武
1b28cba792
gnu: xfce4-cpufreq-plugin: Update to 1.2.9. 
* gnu/packages/xfce.scm (xfce4-cpufreq-plugin): Update to 1.2.9.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I81810224f71c70ecf41f1ecad1b65651f8cfd918
 2025-01-01 10:48:34 +08:00