Commit graph

150085 commits

Author SHA1 Message Date
Janneke Nieuwenhuizen
c7f5d29fe2
gnu: elfutils: Update to 0.192; fixes build with gcc-14.
Version 0.187 does not compile with gcc-14: -Werror=stringop-overflow.

* gnu/packages/elf.scm (elfutils): Update to 0.192.  This fixes the build with
gcc-14.

Change-Id: I9e31f24c1e62c45390789072b52dfc10d90581fe
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
a66e6229a8
gnu: bdb: Use automake-1.16.5.
This avoids
    aclocal/types.m4:7: warning: underquoted definition of AM_SEARCH_USIZES

and its consequent error.

* gnu/packages/dbm.scm (bdb-4.8)[native-inputs]: Use automake-1.16.5.

Change-Id: I0f415f230198604297531499f37524b140543b9e
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
648ede2beb
gnu: automake-1.16.5: Skip tests.
As 23 compiler "tap" tests fail that cannot be easily skipped, disable tests
altogether.

    ERROR: t/depcomp-auto
    =====================

    ERROR: t/depcomp-auto.tap - missing test plan
    ERROR: t/depcomp-auto.tap - exited with status 77

    ERROR: t/depcomp-cpp
    ====================

    ERROR: t/depcomp-cpp.tap - missing test plan
    ERROR: t/depcomp-cpp.tap - exited with status 77

    ERROR: t/depcomp-dashmstdout
    ============================

    ERROR: t/depcomp-dashmstdout.tap - missing test plan
    ERROR: t/depcomp-dashmstdout.tap - exited with status 77

    ERROR: t/depcomp-gcc
    ====================

    ERROR: t/depcomp-gcc.tap - missing test plan
    ERROR: t/depcomp-gcc.tap - exited with status 77

* gnu/packages/autotools.scm (automake)[arguments]: Skip tests.  Remove
"skip-test" phase, as the "tap" tests ERROR out when skipped.
(automake)[arguments]: Enable tests.  Add, instead of replace, "skip-tests" phase.

Change-Id: Iacc2ca3bc84f0a4b261663b9178922bcb1c18578
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
c3b3a6442f
gnu: Re-Add automake-1.16.5.
* gnu/packages/autotools.scm (automake): Rename to...
(automake-1.16.5): ...this, and downgrade version to 1.16.5.
[arguments]: Rename phase "skip-test" to "skip-tests", skip 8 more tests
that fail with gcc-14.
[source]:  Move to...
(automake): ...this new variable.
[arguments]: Replace "skip-tests" phase.

Change-Id: Iacc2ca3bc84f0a4b261663b9178922bcb1c18578
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
143ec73ecb
gnu: automake: Update to 1.17; fixes build with gcc-14.
* gnu/packages/autotools.scm (automake): Update to 1.17.  This fixes the build
with gcc-14.
[arguments]: Rembove custom #:configure-flags.

Change-Id: Iedddebb6245c85f7a7c532594e6bc0fd9b151584
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
380e83491c
gnu: automake: Fix build with gcc-14.
* gnu/packages/autotools.scm (automake)[arguments]: Add
"CC=-Wno-implicit-function-declaration" to #:configure-flags.

Change-Id: Ie3318f9717beb9871887fa01a53c4b999e917275
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
f66b6a0f70
gnu: unzip: Fix build with gcc-14.
* gnu/packages/compression.scm (unzip)[arguments]: Add CC to #:make-flags to
relax gcc-14's strictness.  In phase "build" use target "generic" rather than
"generic_gcc".

Change-Id: I9b4753529b15b5766d7764553bf1fb234c437d45
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
1047ae5042
gnu: gettext: Update to 0.23.
* gnu/packages/patches/gettext-libunicode-update.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister.
* gnu/packages/gettext.scm (gettext-minimal): Update to 0.23.
[source]: Remove patch.
[arguments]: In phase "patch-tests", skip gnulib test "test-execute.sh".

Change-Id: Ibac01c139e135c3a9c13f9077b4fbc6a7db93207
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
07d2efc4fa
gnu: gettext: Fix build with gcc-14.
* gnu/packages/gettext.scm (gettext-minimal) [arguments]: In phase
"patch-tests", skip failing "xgettext-javascript-6" test.

Change-Id: Ibac01c139e135c3a9c13f9077b4fbc6a7db93207
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
256c8ffe50
gnu: zip: Fix build with gcc-14.
* gnu/packages/compression.scm (zip)[arguments]: Add CC to #:make-flags to
relax gcc-14's strictness.  In phase "build" use target "generic" rather than
"generic_gcc".

Change-Id: I21af1acdc550c83e63241811a6586598f187b2ef
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
1eaeae0af9
gnu: libffi: Update to 3.4.6; fixes build with gcc-14.
* gnu/packages/libffi.scm (libffi): Update to 3.4.6.
[arguments]: Remove CFLAGS hack.

Change-Id: I1d9ea6094e42d154f6fa17b47106e066b32d9ca2
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
6aac8c1c77
gnu: libffi: Fix build for x86_64-linux with gcc-14.
* gnu/packages/libffi.scm (libffi) [arguments]: When building for
x86_64-linux, also use "CFLAGS=-g -O2 -Wno-implicit-function-declaration".

Change-Id: I21af1acdc550c83e63241811a6586598f187b2ef
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
e01bf1d99d
gnu: commencement: gcc-final: Fix build for x86-linux with gcc-14.
Summary: Use fixes for the 64bit Hurd also on linux.

* gnu/packages/commencement.scm (gcc-final)[arguments]: When building for
x86-linux, create a gcc wrapper in phase "create-stage-wrapper", use it by
adding STAGE_CC_WRAPPER to #:make-flags, and CC to #:configure-flags to
convince configure gmp that gcc and g++ work.
2025-01-01 16:19:12 +01:00
Janneke Nieuwenhuizen
d812f8a61d
gnu: bash-minimal: Fix build for x86-linux with gcc-14.
* gnu/packages/bash-minimal.scm (bash)[arguments]: When building
for x86-linux, also use CFLAGS in #:configure-flags to relax gcc-14's strictness.

Change-Id: I21af1acdc550c83e63241811a6586598f187b2ef
2025-01-01 16:19:11 +01:00
Efraim Flashner
2580888488
gnu: gcc-boot0: Fix building on powerpc64le-linux.
* gnu/packages/commencement.scm (gcc-boot0)[inputs]: When building for
powerpc64le-linux use libstdc++-boot0 from gcc-5.

Change-Id: I21df5ba91dcff9f6b83977996ef2d15306ab6ca9
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
0cc602d749
gnu: commencement: gcc-boot0: Fix build for x86-linux with gcc-14.
* gnu/packages/commencement.scm (gcc-boot0)[arguments]: When building for
x86-linux, add phase "patch-system.h" to substitute fix SIZE_MAX macro.

Change-Id: I6e552aaa458755ec920873a0535f599c88a1f74f
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
1a6bbf1fd4
Revert "Partial revert "gnu: make-bootstrap: Update gcc-static to gcc-14, for the 64bit Hurd.""
This cleanup was reverted because it led to a world rebuild.

This reverts commit 7b64a96326.

Change-Id: Ieefd576c365527267c04ee64292c15e9702d5254
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
6a75866d36
Revert "Partial revert "gnu: bootstrap: %bootstrap-glibc: Also fix libm.so.""
This cleanup was reverted because it led to a world rebuild.

This reverts commit 126a2e8cb4.

Change-Id: I5c862602c3722c787e0ed6deac55920007411fd5
2025-01-01 16:19:11 +01:00
Janneke Nieuwenhuizen
da635fc42d
Revert "Partial revert "gnu: bootstrap: %bootstrap-gcc: Also wrap g++ for the 64bit Hurd.""
This cleanup was reverted because it led to a world rebuild.

This reverts commit 006679d1e6.

Change-Id: Id14fcc35fb8d550644b4d6cebace110ae0bab59e
2025-01-01 16:19:11 +01:00
Ricardo Wurmus
34a279e0da
gnu: python-hicmatrix: Work around defect in python-tables.
* gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2.
[arguments]: Add phase 'find-blosc2.

Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
2025-01-01 15:29:14 +01:00
Ricardo Wurmus
4b38f39022
gnu: jupyter: Skip sanity check.
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (jupyter)[arguments]: Delete 'sanity-check
phase.

Change-Id: I715d9161d7f23c1f72125aea8b4c0e1bb5490b1e
2025-01-01 15:14:55 +01:00
Ricardo Wurmus
a39c4b7e38
gnu: python-notebook: Skip sanity check.
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (python-notebook)[arguments]: Delete
'sanity-check phase.

Change-Id: I23d69c852fd9de98c010cce82b09ac541c0e2121
2025-01-01 15:14:34 +01:00
Ricardo Wurmus
cbc6fa9800
gnu: python-nbclassic: Skip sanity check.
This is temporary and will be removed on the python-team branch.

* gnu/packages/jupyter.scm (python-nbclassic)[arguments]: Delete 'sanity-check
phase.

Change-Id: I8a3190a849d192d9c7f1b2e903b55705622671f8
2025-01-01 15:00:28 +01:00
Ricardo Wurmus
44e7540663
gnu: python-zarr: Update to 2.18.4.
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.18.4.
[arguments]: Add phase 'set-version.
[propagated-inputs]: Add python-ipywidgets, python-notebook, python-numpydoc,
and python-pydata-sphinx-theme.
[native-inputs]: Remove python-fsspec, python-h5py, python-pytest-timeout, and
python-setuptools-scm; add python-sphinx, python-sphinx-copybutton,
python-sphinx-design, python-sphinx-issues, and python-setuptools.

Change-Id: I707da0087b8aa6cf57be4e5dd9019b24620f101f
2025-01-01 14:43:04 +01:00
Ricardo Wurmus
f492431b40
gnu: python-awkward: Update to 2.7.2.
* gnu/packages/python-xyz.scm (python-awkward): Update to 2.7.2.
[arguments]: Skip three broken tests.

Change-Id: Ifdfcda9c57b9b27e9c3b5e0b05c7896d552b30cd
2025-01-01 14:36:36 +01:00
Ricardo Wurmus
f2ef1fdcc1
gnu: python-awkward-cpp: Update to 43.
* gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 43.
[propagated-inputs]: Remove python-importlib-resources.

Change-Id: I7201a31d49287f9a656f53fff953ebb593620712
2025-01-01 14:36:26 +01:00
Ricardo Wurmus
6b692fc0f9
gnu: python-pybedtools: Update to 0.10.0.
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.10.0.
[arguments]: Use #:test-flags to disable one test instead of patching test
files in 'disable-broken-tests phase; add new phases 'fix-references and
'build-extensions.
[propagated-inputs]: Remove python-matplotlib; add kentutils, python-numpy,
python-pandas, and python-psutil.
[inputs]: Add zlib.
[native-inputs]: Remove python-numpy, python-pandas, python-psutil,
python-six, and kentutils.

Change-Id: I62948b1f3169f93f752896fdf02d2887740e98cc
2025-01-01 14:13:34 +01:00
Ricardo Wurmus
3c31650d18
gnu: python-upsetplot: Add missing inputs.
* gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
2025-01-01 14:11:52 +01:00
Yarl Baudig
41e192c922
gnu: pinebook-pro-image-type: augment partition offset.
* gnu/system/images/pinebook-pro.scm: augment partition offset
to make room for the bootloader.

Change-Id: I91a3758243a13960165d40b94efe017e6e059a22
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:38:27 +01:00
Vinicius Monego
07a352738a
gnu: Add python-sphinx-inline-tabs.
* gnu/packages/sphinx.scm (python-sphinx-inline-tabs): New variable.

Change-Id: I92516cdc404cdcaee74cb8cf19f255c049c43021
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:05 +01:00
vicvbcun
96b7e92a8f
gnu: pari-gp: Install galdata.
* gnu/packages/algebra.scm (pari-galdata): New variable.
(pari-gp)[arguments]<#:phases>: Add phase "install-galdata".

Change-Id: Iaec77b0ab60d8ff59c8a36e7e0a7878b58742751
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: Id74aa6ce315df48a2d917baf1a436ba54b1b5185
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
vicvbcun
2d0faf10ad
gnu: pari-gp: Use G-Expressions.
* gnu/packages/algebra.scm (pari-gp)[arguments]: Use G-Expressions.  Unset
make-flags.

Change-Id: Id2be46acd67b474d6fdb8935070ffb243e87f920
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I7be07998e9e2d1fe9194d4af6a57537467f5e097
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
vicvbcun
806d23693a
gnu: Add tachyon.
* gnu/packages/graphics.scm (tachyon): New variable.

Change-Id: I57780c08c6b496e40459789d693b9b24fb4a9da8
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I5914afad8d293787b9898a229084e6c79fbe8911
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
vicvbcun
3edd17ea51
gnu: Add palp.
* gnu/packages/maths.scm (palp): New variable.

Change-Id: I37ee870858fef505999dfdc02d1955673366d718
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I853cbccca5c34355d9df74a3cbbd5f818a21ebb5
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
Vinicius Monego
9a7e36b4e1
gnu: Add gfan.
* gnu/packages/maths.scm (gfan): New variable.

Change-Id: I3b4952ddfcaecac17ab29bb3cd2f56fc125ab763
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
Vinicius Monego
7bc6ec189e
gnu: Add sympow.
* gnu/packages/maths.scm (sympow): New variable.

Change-Id: Iaeaea352f0a3a65a877b2845ecdc18856ded6d3c
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
Vinicius Monego
0de2caa2a2
gnu: Add python-lrcalc.
* gnu/packages/algebra.scm (python-lrcalc): New variable.

Change-Id: Id174ecfa092786ca16fbde2be68e12af0b2d9af3
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
Vinicius Monego
ab81e930a4
gnu: Add python-pytz-deprecation-shim.
* gnu/packages/time.scm (python-pytz-deprecation-shim): New variable.

Change-Id: I481ea9818444d9a14efcf7b11d44c68a5f2fec3f
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
vicvbcun
5ae2849a68
gnu: Add sagemath-data-combinatorial-designs.
* gnu/packages/sagemath.scm (sagemath-data-combinatorial-designs): New
variable.

Change-Id: Ib1ad3675256be1958427cd37a76bb5bdbf16fd12
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I758e22fabcc11ca0583ab899acc0c653a35c7f43
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
vicvbcun
389dd532a6
gnu: Add sagemath-data-graphs.
* gnu/packages/sagemath.scm (sagemath-data-graphs): New variable.

Change-Id: I7c537aac21f43a8712fd6d542551f78c3ebaec68
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I88f35ccf94cfe0d866ef57cb893844c8285d5138
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
vicvbcun
df69b89c94
gnu: Add sagemath-data-polytopes-db.
* gnu/packages/sagemath.scm (sagemath-data-polytopes-db): New variable.

Change-Id: I8dd6cbd0b71a01d817486882bec8f126dece7e36
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: Iada71a7939e5deadf6888af6c21621e5458622d1
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:04 +01:00
Vinicius Monego
e5eea7d9cb
gnu: Add sagemath-data-conway-polynomials.
* gnu/packages/sagemath.scm (sagemath-data-conway-polynomials): New variable.

Change-Id: Ia3a087b19a0ade5d927422bd365283d209df0863
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
2025-01-01 13:05:02 +01:00
Artyom V. Poptsov
8b80a84d70
gnu: python-augeas: Fix build.
* gnu/packages/augeas.scm (python-augeas): Fix build.
[native-inputs]: Add python-setuptools and python-wheel.  Sort alphabetically.

Change-Id: I4b8d31a3e673e9be6e6dd741cf32c6e016858b21
2025-01-01 14:50:51 +03:00
宋文武
c943829ac7
gnu: xfce4-weather-plugin: Switch to git source.
* gnu/packages/xfce.scm (xfce4-weather-plugin)[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[arguments]: Add "--enable-maintainer-mode" to configure-flags.
[home-page]: Set to docs.xfce.org.

Change-Id: I72bcdab8f58401347a2993172f07237082e0e80a
2025-01-01 10:48:35 +08:00
宋文武
0b3ebac7ac
gnu: xfce4-wavelan-plugin: Update to 0.6.4.
* gnu/packages/xfce.scm (xfce4-wavelan-plugin): Update to 0.6.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: Idc3e19f8c0f4b328096a1eebca0dd4272226376c
2025-01-01 10:48:35 +08:00
宋文武
8183cf22bd
gnu: xfce4-verve-plugin: Update to 2.0.4.
* gnu/packages/xfce.scm (xfce4-verve-plugin): Update to 2.0.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I778fdec57a65747938f542c22390b4ceb3cdb8db
2025-01-01 10:48:35 +08:00
宋文武
4e9e63b09b
gnu: xfce4-timer-plugin: Update to 1.7.3.
* gnu/packages/xfce.scm (xfce4-timer-plugin): Update to 1.7.3.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I4364e3e6a8c0b4d530a0f7df7514afc08cfc96b0
2025-01-01 10:48:34 +08:00
宋文武
806f52961f
gnu: xfce4-time-out-plugin: Update to 1.1.4.
* gnu/packages/xfce.scm (xfce4-time-out-plugin): Update to 1.1.4.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I5817989938128fef9a9b423e817515783b3017e2
2025-01-01 10:48:34 +08:00
宋文武
ae491da847
gnu: xfce4-systemload-plugin: Update to 1.3.3.
* gnu/packages/xfce.scm (xfce4-systemload-plugin): Update to 1.3.3.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I1b970db60e4a61ca7ef5a99cec70bcbf23c21e56
2025-01-01 10:48:34 +08:00
宋文武
c3cfe5966d
gnu: xfce4-stopwatch-plugin: Update to 0.5.2.
* gnu/packages/xfce.scm (xfce4-stopwatch-plugin): Update to 0.5.2.
[source]: Switch to git-fetch.
[native-inputs]: Add xfce4-dev-tools.
[home-page]: Set to docs.xfce.org.

Change-Id: I2656b9a43041215fda5f6e21c86a8b35666bcde9
2025-01-01 10:48:34 +08:00