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143978 commits

Author SHA1 Message Date
Sharlatan Hellseher
94dec50325
gnu: python-radio-beam: Update to 0.3.8.
* gnu/packages/astronomy.scm (python-radio-beam): Update to 0.3.8.
[arguments] <#:tests>: Disable, as newer version of NumPy is required.
[native-inputs]: Add python-setuptools and python-wheel. Place before
'propagated-inputs'.

Change-Id: Idca5458b16a70b2ab07d0f30576e0f945b5f0ea0
2024-10-30 19:32:16 +00:00
Sharlatan Hellseher
24825630fc
gnu: python-pyxsim: Update to 4.4.2.
* gnu/packages/astronomy.scm (python-pyxsim): Update to 4.4.2.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I37cb512dbe3f37aaf1ad9c4a4f2b31a9aec25519
2024-10-30 19:32:16 +00:00
Sharlatan Hellseher
abf8999eee
gnu: python-pyvo: Update to 1.5.3.
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.5.3.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I75aac22869320c78cd036c3be1ffe6892469ee59
2024-10-30 19:32:16 +00:00
Sharlatan Hellseher
1c8b774584
gnu: python-pyregion: Update to 2.3.0.
* gnu/packages/astronomy.scm (python-pyregion): Update to 2.3.0.
[arguments] <#:phases>: Add 'create-setup.py phase.
[native-inputs]: Add python-extension-helpers, python-pytest-astropy, and
python-setuptools.

Change-Id: I4c114a5ec51a7dae2197f60579f1e63597c23ea7
2024-10-30 19:32:16 +00:00
Sharlatan Hellseher
90f49faac1
gnu: python-pynbody: Update to 1.6.0.post0.
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.6.0.post0.

Change-Id: Ib05e972e13b823930bd644fce70475a3ad8aff96
2024-10-30 19:32:16 +00:00
Sharlatan Hellseher
81dff32a6f
gnu: python-photutils: Update to 2.0.1.
* gnu/packages/astronomy.scm (python-photutils): Update to 2.0.1.
[arguments]<#:phases>: Add 'relax-requirements phase.
[propagated-inputs]: Remove python-scikit-learn; add python-regions.
[native-inputs]: Add python-setuptools.

Change-Id: If8533af300fdc695e9415d80806c5d88620921cb
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
2263c490a2
gnu: python-ndcube: Update to 2.2.3.
* gnu/packages/astronomy.scm (python-ndcube): Update to 2.2.3.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I1357dfd6cec1d191ba5d03a96023e35ad1e88177
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
6ec8ad1551
gnu: python-glymur: Update to 0.13.6.
* gnu/packages/python-xyz.scm (python-glymur): Update to 0.13.6.
[phases]: Remove 'disable-failing-tests and move the logic to
<#:tests-flags>.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ied56e22d938b7cc61969892b680c9e72d1cfce1e
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
1e2534fe39
gnu: python-ephem: Update to 4.1.6.
* gnu/packages/astronomy.scm (python-ephem): Update to 4.1.6.

Change-Id: I1a2f89d7ef5ec3289b92ce450a83d4c59f4457b5
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
de951c61a7
gnu: python-crds: Update to 12.0.4.
* gnu/packages/astronomy.scm (python-crds): Update to 12.0.4.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I9ceeca97a8d05a0c7f72ca61c03c8d2b9877f7fb
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
7eea67cee5
gnu: python-astropy: Update to 6.1.4.
* gnu/packages/astronomy.scm (python-astropy): Update to 6.1.4.

Change-Id: I255426bf289d3e39dd2a39c40787b90e97452906
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
06648cd12e
gnu: python-astropy-iers-data: Update to 0.2024.10.14.0.32.55.
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.10.14.0.32.55.
[arguments] <#:tests?>: Adjust comments to reflect current
status. <#:phases>: Remove 'set-env-version' phase.
[native-inputs]: Add python-setuptools and python-wheel; remove
python-pytest and python-pytest-remote-data.

Change-Id: Ia22b52dc41405d73ed313e980f798ae725f47703
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
bf4c6f70a1
gnu: python-astroalign: Update to 2.6.0.
* gnu/packages/astronomy.scm (python-astroalign): Update to 2.6.0.
[propagated-inputs]: Remove python-sep; add python-sep-pjw.
[native-inputs]: Add python-setuptools.

Change-Id: Ib233920b84d1c7110f2f0c3ecb82d2c68cb79a4c
2024-10-30 19:32:15 +00:00
Sharlatan Hellseher
c9797698f7
gnu: wcslib: Update to 8.3.
* gnu/packages/astronomy.scm (wcslib): Update to 8.3.

Change-Id: I200ac8887e47dafacd33e6b9168defb928e93c50
2024-10-30 19:32:14 +00:00
Sharlatan Hellseher
7a5bda4d27
gnu: stellarium: Update to 24.3.
* gnu/packages/astronomy.scm (stellarium): Update to 24.3.

Change-Id: Ife3a63c27360a6997b367e5d7fc011359d98395f
2024-10-30 19:32:14 +00:00
Sharlatan Hellseher
869dd5111d
gnu: siril: Update to 1.3.3.
* gnu/packages/astronomy.scm (siril): Update to 1.3.3.
[inputs]: Add curl, ffmpeg, lcms-next, libgit2, libjxl, libxisf, lz4,
pugixml, and wcslib. Sort alphabetically.
[native-inputs]: Remove cmake; add cmake-minimal, and glib:bin.

Change-Id: I3eaa0c1da7889d740850cac7c8860683e9b503a9
2024-10-30 19:32:14 +00:00
Sharlatan Hellseher
2691f90fdf
gnu: Add lcms-next.
* gnu/packages/ghostscript.scm (lcms-next): New variable.

Change-Id: I45c8ce69f044e866654de43ffb7abb357ce1361f
2024-10-30 19:32:14 +00:00
Sharlatan Hellseher
a0c7c51028
gnu: indi-2.0: Update to 2.1.0.
* gnu/packages/astronomy.scm (indi-2.0): Update to 2.1.0.

Change-Id: I7391d6ca6fb644baa4ad3c233e37e0713a88a31d
2024-10-30 19:32:14 +00:00
Sharlatan Hellseher
64b7dc2e45
gnu: calceph: Update to 4.0.1.
* gnu/packages/astronomy.scm (calceph): Update to 4.0.1.

Change-Id: Ic643270cea8bfb0d7af30412ad6bddd4a63cea41
2024-10-30 19:32:03 +00:00
Vagrant Cascadian
d6f775c30c
gnu: diffoscope: Update to 282.
* gnu/packages/diffoscope.scm (diffoscope): Update to 282.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-10-30 20:07:24 +08:00
Ashish SHUKLA
654cac3a4a
gnu: ugrep: Update to 7.0.2.
* gnu/packages/search.scm (ugrep): Update to 7.0.2.

Change-Id: Ia270e6be43c8154865ae965af60ff52ff81d00e2
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-10-30 19:26:23 +08:00
Mark H Weaver
913fdb7ea8
gnu: icecat: Update to 115.17.0-guix1 [security fixes].
Includes fixes for CVE-2024-10458, CVE-2024-10459, and CVE-2024-10463.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2024-10-30 02:20:27 -04:00
Efraim Flashner
a9c33e9f68
download: Remove defunct gnupg mirrors.
* guix/download.scm (%mirrors): Remove defunct gnupg mirrors.

Change-Id: Ib6ecad007712e4efe5437709a6d2a2a0bfce6e97
2024-10-29 19:37:05 +02:00
Grigory Shepelev
653121e1ab
gnu: Add cl-wayflan.
* gnu/packages/lisp-xyz.scm (cl-wayflan, sbcl-wayflan): New variables.

Change-Id: I65982ad6f5c034f611292d4f660b15e4e42f8da0
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2024-10-29 15:22:08 +01:00
Grigory Shepelev
958f9175bd
gnu: Add cl-input-event-codes.
* gnu/packages/lisp-xyz.scm (cl-input-event-codes, ecl-cl-input-event-codes,
  sbcl-cl-input-event-codes): New variables.

Change-Id: I47e65729f907e46d9deeb7dc0219ac9b1ba1a291
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-10-29 14:56:46 +01:00
Grigory Shepelev
714f60d2f7
gnu: Add cl-pango.
* gnu/packages/lisp-xyz.scm (cl-pango, ecl-cl-pango, sbcl-cl-pango): New
  variables.

Change-Id: I3615ef64197e8bee5cbb733bc427a54607bae4b2
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2024-10-29 14:42:29 +01:00
Grigory Shepelev
816a06ce4d
gnu: Add cl-xkb.
* gnu/packages/lisp-xyz.scm (cl-xkb, ecl-cl-xkb, sbcl-cl-xkb): New variables.

Change-Id: Iaced3e5e084cc320a076ffb81d10fd9dde6be4de
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-10-29 14:25:59 +01:00
Grigory Shepelev
7a961ba758
gnu: Add cl-posix-shm.
* gnu/packages/lisp-xyz.scm (cl-posix-shm, sbcl-posix-shm): New variables.

Change-Id: I5ac9a3751977bf98d817acd8b98d1a2ad9d393f7
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-10-29 14:17:24 +01:00
Roman Scherer
d1aefac6f6
gnu: Add cl-cacle.
* gnu/packages/lisp-xyz.scm (sbcl-cacle, cl-cacle, ecl-cacle): New variables.

Change-Id: I67e6702d132fed017d86be82665e44021c1b081f
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-10-29 13:40:50 +01:00
Zheng Junjie
4491dec50a
gnu: busybox: Fix build on non x86 platform.
* gnu/packages/patches/busybox-add-missing-sha-NI-guard.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/busybox.scm (busybox): Use it.

Change-Id: I1e6a24dd5b86871a3479ab6ecd247b31c746ec75
2024-10-29 11:46:41 +08:00
Ricardo Wurmus
d29090727b
gnu: Add chow-tape-model.
* gnu/packages/audio.scm (chow-tape-model): New variable.

Reviewed-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I62b6b234c4fe62594f93d4da7ecff53d48a58cd8
2024-10-28 19:08:03 +01:00
Andreas Enge
4009d1de95
gnu: owl: Correct package.
This is a follow-up to commit 3566cabecc
which contains a preliminary version of the commit.

* gnu/packages/scheme.scm (owl): Improve some fields.
[native-inputs]: Drop pandoc.

Change-Id: Iba99892b58ffa1c5267e3f7d80912fb1a964e2ed
2024-10-28 11:54:33 +01:00
Nicolas Graves
351fdf69f7
gnu: postgresql: Deprecate unsupported versions.
Versions 10 and 11 are unsupported according to
https://www.postgresql.org/support/versioning/

postgresql-10 also has a CVE.

* doc/guix.texi: Change default value of postgresql-service-type's
postgresql field.
* gnu/packages/databases.scm (postresql-10, postgresql-11): Use
define-deprecated/public to warn users.
* gnu/services/databases.scm (postgresql-configuration): Change the
default value of postgresql-configuration-postgresql.
* gnu/tests/guix.scm (%guix-data-service-os): Change the default value
of postgresql.

Signed-off-by: Andreas Enge <andreas@enge.fr>
Change-Id: Ie8744c8e1f246e9b45ff5e29d4e98214de3ca66a
2024-10-28 10:41:27 +01:00
Efraim Flashner
5034f2d45c
gnu: owl: Only build with pandoc on supported systems.
* gnu/packages/scheme.scm (owl)[native-inputs]: Only use pandoc as an
input on systems where pandoc is supported.

Change-Id: I9a7727789d303b07834a689ce917d7ac88172212
2024-10-28 11:33:47 +02:00
Ludovic Courtès
f85e9b104a
gnu: prrte: Record the absolute file name of ‘prted’.
Previously a command like:

  guix shell --pure openmpi@5 openssh intel-mpi-benchmarks \
    --with-input=openmpi@4=openmpi@5 slurm -- \
    salloc -N2 -- mpirun -np 2 --map-by node IMB-MPI1 PingPong

would silently fail due to ‘prted’ not being found in $PATH.

* gnu/packages/parallel.scm (prrte)[arguments]: Add
‘patch-prted-reference’ phase.

Change-Id: Iff30cb5a4dcc9e9cfe6638d518ee4f19561289a0
Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-10-28 10:22:49 +01:00
Nicolas Graves
386399296a
gnu: libtar: Patch CVEs. [security fixes]
This fixes CVE-2021-33643, CVE-2021-33644, CVE-2021-33645,
CVE-2021-33646.

* gnu/packages/compression.scm (libtar)[source]<patches>: Add patches
here...
* gnu/local.mk (dist_patch_DATA): ...and here.
* gnu/packages/patches/libtar-CVE-2021-33643-CVE-2021-33644.patch,
gnu/packages/patches/libtar-CVE-2021-33645-CVE-2021-33646.patch: New files.

Signed-off-by: Andreas Enge <andreas@enge.fr>
Change-Id: I60a6b753fddc1a0d08f96010ef3d57ec66c2251b
2024-10-28 10:06:42 +01:00
Juliana Sims
3566cabecc
gnu: Add owl.
* gnu/packages/scheme.scm (owl): New variable.

Change-Id: Ibb242bbcdedb92419b59e05635e8a32e85afc24e
Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-10-28 09:54:52 +01:00
Efraim Flashner
4a46758aee
gnu: gawk: Add search-paths.
* gnu/packages/gawk.scm (gawk)[search-paths]: New field.

Change-Id: Idbf2709b793ebd58e1aae8d07698e1f3e816babd
2024-10-28 08:12:45 +02:00
jgart
18ba58a107
gnu: trealla: Update to 2.58.0.
* gnu/packages/prolog.scm (trealla): Update to 2.58.0.

Change-Id: Ibd2a982389a07c07523fa3a787f06e2013adcdfc
2024-10-28 00:24:08 -05:00
Nicolas Graves
fafe0cea38
gnu: Remove assimp-5.0.
This package is outdated, not used anymore in Guix and has a CVE.

* gnu/packages/graphics.scm (assimp-5.0): Delete variable.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-10-28 12:29:38 +08:00
Nicolas Graves
930f278821
gnu: sbcl-classimp: Update to 0.0.0-1.6c74f38.
* gnu/packages/lisp-xyz.scm
(sbcl-classimp): Update to 0.0.0-1.6c74f38.
[inputs]: Replace assimp-5.0 by assimp.
[arguments]<#:phases>: Adapt phase 'patch-assimp-lib-path.

(cl-classimp): Simplify.
(ecl-classimp): Simplify.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-10-28 12:29:38 +08:00
Sughosha
67c755e6b3
gnu: Add ghostwriter.
* gnu/packages/kde-office.scm (ghostwriter): New variable.

Change-Id: I634e4ecab8c53aa67eb521f479d1acff6540c9fe
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-10-28 12:29:38 +08:00
Sughosha
bc00808ca8
gnu: Remove ghostwriter.
* gnu/packages/text-editors.scm (ghostwriter): Remove variable.

Change-Id: I3bf4f80a232539bad72dec1110734408d5054453
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-10-28 12:29:38 +08:00
Vitalii Koshura
9d6f10e875
gnu: Remove boinc-server.
boinc-server is not supposed to be installed this (or any other) packaged way.
Also, it uses a completely different versioning scheme.

* gnu/packages/distributed.scm (boinc-server): Delete variable.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: I85c7176424c7db65eb5233bfefab01c62a0d757c
2024-10-28 12:29:38 +08:00
Ashish SHUKLA
af67cce902
gnu: bpftrace: Update to 1.21.2.
* gnu/packages/linux.scm (bpftrace): Update to 1.21.2.
[arguments]<#:phases> Rename, and update "patch-paths" phase.

Change-Id: If7180d4da8073914172296f46a3427ccdff22478
2024-10-28 12:29:35 +08:00
Sharlatan Hellseher
0d15c6e46c
gnu: Add python-astropy-minimal.
* gnu/packages/astronomy.scm (python-astropy-minimal): New variable.

Change-Id: Iae90a9d988647b6f8f81c0ccb871c156ee6dfe1e
2024-10-27 21:03:44 +00:00
Rostislav Svoboda
091131af64
gnu: Add emacs-anaconda-mode.
* gnu/packages/emacs-xyz.scm (emacs-anaconda-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I273c26cd66178d6f990bf0fca0432699c8bab202
2024-10-27 11:18:44 +01:00
Rostislav Svoboda
6d334173a3
gnu: Add emacs-pythonic.
* gnu/packages/emacs-xyz.scm (emacs-pythonic): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: Ie8f1322fbf8230d4b5ca258cb7ccacee1daa231a
2024-10-27 11:14:46 +01:00
Cayetano Santos
0e9a29eda8
gnu: emacs-org-ref: Update to 3.1-0.732a20b.
The reason to exclude openalex.el from this package doesn't hold anymore, see
<https://github.com/jkitchin/org-ref/issues/1085>.

Emacs-helm is already pulled from emacs-helm-bibtex, no need to do it here.

Emacs-request is a new hard dependency. Emacs-ivy is not.

* gnu/packages/emacs-xyz.scm (emacs-org-ref): Update to 3.1-0.732a20b.
[arguments]: Remove EMACS-HELM and EMACS-IVY.  Add EMACS-REQUEST.

Change-Id: I04f4cb9ffacaaf25a3e844c8e1d1b194e41d90a9

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I510bf7b74520c0cf7c128b88cb02e975a6df898a
2024-10-27 11:07:15 +01:00
Liliana Marie Prikler
d91b7a387a
gnu: Add clingcon.
* gnu/packages/potassco.scm (clingcon): New variable.
2024-10-27 09:25:25 +01:00