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Author SHA1 Message Date
jgart
a8fb09e0a3
gnu: Add clasp-cl-interpol. 
* gnu/packages/lisp-xyz.scm (clasp-cl-interpol): New variable.

Change-Id: I567ac3a9c94dedc431100072a3051c01fd7cf33e
 2025-01-01 19:23:05 -06:00
jgart
f77053f60c
gnu: Add clasp-charje.documentation. 
* gnu/packages/lisp-xyz.scm (clasp-charje.documentation): New variable.

Change-Id: I8647d465aa76707430d5fd12fa328531bf954ea7
 2025-01-01 19:23:05 -06:00
jgart
2decbe5da5
gnu: Add clasp-binding-arrows. 
* gnu/packages/lisp-xyz.scm (clasp-binding-arrows): New variable.

Change-Id: I66c51f7d14768fdfcf1009351c192d92d6afb7a5
 2025-01-01 19:23:05 -06:00
jgart
26a479d5d6
gnu: Add clasp-acclimation. 
* gnu/packages/lisp-xyz.scm (clasp-acclimation): New variable.

Change-Id: Id24bf747ee0de02cef4d6b5c2499b7cba00d0402
 2025-01-01 19:23:05 -06:00
jgart
0e3724d1f7
gnu: Add clasp-closer-mop. 
* gnu/packages/lisp-xyz.scm (clasp-closer-mop): New variable.

Change-Id: Ib2beda4ea84fe74a152a541cb353382b46a2703f
 2025-01-01 19:23:05 -06:00
jgart
4835d1ad7e
gnu: Add clasp-clostrum. 
* gnu/packages/lisp-xyz.scm (clasp-clostrum): New variable.

Change-Id: I908ba92e5903fcd7b3a64cd69ba81b10c455d7e9
 2025-01-01 19:23:05 -06:00
jgart
f5e81787a3
gnu: Add clasp-cluffer. 
* gnu/packages/lisp-xyz.scm (clasp-cluffer): New variable.

Change-Id: I1c7f986ad3544d27b4525289fb202bb32fa2506a
 2025-01-01 19:23:05 -06:00
jgart
bcb4b14968
gnu: Add clasp-documentation-utils. 
* gnu/packages/lisp-xyz.scm (clasp-documentation-utils): New variable.

Change-Id: Id76d89a0bfc3e87fd0b5ecf66631b459e61aa68d
 2025-01-01 19:23:04 -06:00
jgart
cfaa2b5447
gnu: Add clasp-flexi-streams. 
* gnu/packages/lisp-xyz.scm (clasp-flexi-streams): New variable.

Change-Id: If7bd6104f04f2286ccad70faf658ff209ca83848
 2025-01-01 19:23:04 -06:00
jgart
4f565d9b50
gnu: Add clasp-flexichain. 
* gnu/packages/lisp-xyz.scm (clasp-flexichain): New variable.

Change-Id: I2d4329648bc9fb3047575d29ae457ea6c660ee8b
 2025-01-01 19:23:04 -06:00
jgart
cf32c63a0a
gnu: Add clasp-lorem-ipsum. 
* gnu/packages/lisp-xyz.scm (clasp-lorem-ipsum): New variable.

Change-Id: Ief6996a71b3ae55c8bf5515d5fa852e0c7b7c574
 2025-01-01 19:23:04 -06:00
jgart
a344c28add
gnu: Add clasp-stealth-mixin. 
* gnu/packages/lisp-xyz.scm (clasp-stealth-mixin): New variable.

Change-Id: I56d876d82032d88bc131e24ca9c75338fe33cea3
 2025-01-01 19:23:04 -06:00
jgart
4ed5862b4c
gnu: Add clasp-trivial-garbage. 
* gnu/packages/lisp-xyz.scm (clasp-trivial-garbage): New variable.

Change-Id: I55cc3de3aa943178a7c970cdbd675ce28df16d4b
 2025-01-01 19:23:04 -06:00
jgart
a07fd422d3
gnu: Add clasp-trivial-gray-streams. 
* gnu/packages/lisp-xyz.scm (clasp-trivial-gray-streams): New variable.

Change-Id: Idb48f02ea345bdf5c1cc456b166f884f57772568
 2025-01-01 19:23:04 -06:00
jgart
84561be213
gnu: Add clasp-trivial-indent. 
* gnu/packages/lisp-xyz.scm (clasp-trivial-indent): New variable.

Change-Id: Id570fee78b402199df5ce38d3028be72335b5c09
 2025-01-01 19:23:04 -06:00
jgart
db98f3d2a3
gnu: Add clasp-yason. 
* gnu/packages/lisp-xyz.scm (clasp-yason): New variable.

Change-Id: I79ed3d061fc738aae2bad693bfbeec97d5360c89
 2025-01-01 19:23:04 -06:00
jgart
86c4691ae1
gnu: Add clasp-charje.loop. 
* gnu/packages/lisp-xyz.scm (clasp-charje.loop): New variable.

Change-Id: I0b5b61ed0215671eb5d44478d54d193303b43741
 2025-01-01 19:23:04 -06:00
jgart
49fc149055
gnu: clingo: Rename clasp to potassco-clasp. 
* gnu/packages/potassco.scm (clasp): Rename clasp to potassco-clasp.

Change-Id: Icfe32aae31c3abe655a909d3edf28306eb51f293
 2025-01-01 19:23:04 -06:00
jgart
adac46307f
gnu: clasp: Rename variable. 
* gnu/packages/potassco.scm (clasp): Rename to potassco-clasp.

Change-Id: Icd7758d4839d41ffdc32ad237ae1fea5e55edc24
 2025-01-01 19:23:03 -06:00
jgart
b7b83e248f
gnu: clasp-cl: Rename variable. 
* gnu/packages/lisp.scm (clasp-cl): Rename to clasp.

Change-Id: I8ce65fbcada70fb015812341951373e6804ccebe
 2025-01-01 19:23:03 -06:00
jgart
494742f677
gnu: Add asdf-build-system/clasp. 
* guix/build-system/asdf.scm (asdf-build-system/clasp): New variable.
[native-search-paths]: Add search paths.

Change-Id: I8a868e56a2795cfad05c474a039ab755666ec827
 2025-01-01 19:23:03 -06:00
Jake Shilling
dff037f9aa
gnu: Add cl-transducers. 
* gnu/packages/lisp-xyz.scm (cl-transducers, ecl-transducers,
sbcl-transducers): Add new variables.

Change-Id: Ia06d91c005b70528d5e5b37283e96edf040c2c69
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: jgart <jgart@dismail.de>
 2025-01-01 19:02:41 -06:00
Nicolas Graves
9beb275fe5
gnu: python-jsonschema: Update python-webcolors dependency. 
* gnu/packages/python-xyz.scm (python-jsonschema): Update
python-webcolors dependency.

This fixes the build of python-nbclassic.

Signed-off-by: jgart <jgart@dismail.de>
 2025-01-01 18:27:14 -06:00
Sharlatan Hellseher
88ef90a03a
gnu: packages/astronomy: Sort alphabetically. 
* gnu/packages/astronomy.scm (python-cdflib, python-crds, python-drms,
sextractor, stackistry): Sort variables alphabetically.

Change-Id: I83b699e7d1b127deaa33459b173794e06b235807
 2025-01-01 23:54:59 +00:00
Jakob Kirsch
ce44a09229
gnu: hyprland: Update to 0.46.2. 
* gnu/packages/wm.scm (hyprland): Update to 0.46.2.
[inputs]: Add hyprgraphics and re2-next.

Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Change-Id: Ia3b32dba5bdbcd2791fbb7ed7f93063c26e0bdbc
 2025-01-01 15:15:19 -05:00
Jakob Kirsch
9a36d48e11
gnu: aquamarine: Update to 0.5.1. 
* gnu/packages/xdisorg.scm (aquamarine): Update to 0.5.1.

Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Change-Id: If5e5673f98329c1e95d06f99074bb9dca38d5ca3
 2025-01-01 15:15:18 -05:00
Jakob Kirsch
7e61bf78fa
gnu: hyprutils: Update to 0.2.6. 
* gnu/packages/cpp.scm (hyprutils): Update to 0.2.6.

Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Change-Id: I34a54b5110fc1a74ff9d2e6989d954c8f8ffce78
 2025-01-01 15:15:16 -05:00
Jakob Kirsch
c3ab9a16b7
gnu: Add hyprgraphics. 
* gnu/packages/cpp.scm (hyprgraphics): New variable.

Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Change-Id: I592fdb92f136f2d05c09897fea7c554c30131bec
 2025-01-01 15:15:14 -05:00
Ricardo Wurmus
d43f238638
gnu: python-hmmlearn: Add missing inputs. 
* gnu/packages/machine-learning.scm (python-hmmlearn)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Idd474162534bf8dbbc6e4a9772a2748862e0b045
 2025-01-01 20:15:45 +01:00
Ricardo Wurmus
100c75620a
gnu: python-scanpy: Ignore plotting tests. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Also ignore
tests from test_plotting.py.

Change-Id: I5d2ebb3764e57c5f348be2b3555db99a2ee6ee4f
 2025-01-01 19:54:32 +01:00
Ricardo Wurmus
9ce6e9f94a
gnu: python-scanpy: Use more test-flags. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Remove phase
'delete-bad-tests and use #:test-flags instead; add phase 'discover-anndata.

Change-Id: Idb5bd59a2bba968fbec820603938802cf9443bad
 2025-01-01 19:53:32 +01:00
Ricardo Wurmus
333b5b1fae
gnu: python-jupyter-server: Do not propagate old dataclasses. 
* gnu/packages/jupyter.scm (python-jupyter-server)[propagated-inputs]: Replace
python-anyio with python-anyio/without-dataclasses.

Change-Id: I20737b7d3199b34b155838c75bd19de82d78e1c5
 2025-01-01 18:14:34 +01:00
Ricardo Wurmus
7eea9b7d55
gnu: Add python-anyio/without-dataclasses. 
* gnu/packages/python-xyz.scm (python-anyio/without-dataclasses): New variable.

Change-Id: I40ae9aa7a85f0fe7642dc3b75f3ef9cde17f064f
 2025-01-01 18:11:44 +01:00
Ricardo Wurmus
151865ada4
gnu: python-zarr: Disable one test. 
* gnu/packages/python-xyz.scm (python-zarr)[arguments]: Disable one more test.

Change-Id: I3733078b878fa60c4e382dfca39fcef64cefa1ae
 2025-01-01 17:26:36 +01:00
Ricardo Wurmus
4592ba3d6a
gnu: python-awkward-cpp: Relax dependency on python-scikit-build-core. 
* gnu/packages/python-xyz.scm (python-awkward-cpp)[arguments]: Add phase
'relax-requirements.

Change-Id: I3d4f647f6e5eecd343de4219baf20c6e38a2a5a0
 2025-01-01 17:24:54 +01:00
Ricardo Wurmus
34a279e0da
gnu: python-hicmatrix: Work around defect in python-tables. 
* gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2.
[arguments]: Add phase 'find-blosc2.

Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
 2025-01-01 15:29:14 +01:00
Ricardo Wurmus
4b38f39022
gnu: jupyter: Skip sanity check. 
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (jupyter)[arguments]: Delete 'sanity-check
phase.

Change-Id: I715d9161d7f23c1f72125aea8b4c0e1bb5490b1e
 2025-01-01 15:14:55 +01:00
Ricardo Wurmus
a39c4b7e38
gnu: python-notebook: Skip sanity check. 
This is temporary and will be removed on the python-team branch.

* gnu/packages/python-xyz.scm (python-notebook)[arguments]: Delete
'sanity-check phase.

Change-Id: I23d69c852fd9de98c010cce82b09ac541c0e2121
 2025-01-01 15:14:34 +01:00
Ricardo Wurmus
cbc6fa9800
gnu: python-nbclassic: Skip sanity check. 
This is temporary and will be removed on the python-team branch.

* gnu/packages/jupyter.scm (python-nbclassic)[arguments]: Delete 'sanity-check
phase.

Change-Id: I8a3190a849d192d9c7f1b2e903b55705622671f8
 2025-01-01 15:00:28 +01:00
Ricardo Wurmus
44e7540663
gnu: python-zarr: Update to 2.18.4. 
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.18.4.
[arguments]: Add phase 'set-version.
[propagated-inputs]: Add python-ipywidgets, python-notebook, python-numpydoc,
and python-pydata-sphinx-theme.
[native-inputs]: Remove python-fsspec, python-h5py, python-pytest-timeout, and
python-setuptools-scm; add python-sphinx, python-sphinx-copybutton,
python-sphinx-design, python-sphinx-issues, and python-setuptools.

Change-Id: I707da0087b8aa6cf57be4e5dd9019b24620f101f
 2025-01-01 14:43:04 +01:00
Ricardo Wurmus
f492431b40
gnu: python-awkward: Update to 2.7.2. 
* gnu/packages/python-xyz.scm (python-awkward): Update to 2.7.2.
[arguments]: Skip three broken tests.

Change-Id: Ifdfcda9c57b9b27e9c3b5e0b05c7896d552b30cd
 2025-01-01 14:36:36 +01:00
Ricardo Wurmus
f2ef1fdcc1
gnu: python-awkward-cpp: Update to 43. 
* gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 43.
[propagated-inputs]: Remove python-importlib-resources.

Change-Id: I7201a31d49287f9a656f53fff953ebb593620712
 2025-01-01 14:36:26 +01:00
Ricardo Wurmus
6b692fc0f9
gnu: python-pybedtools: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.10.0.
[arguments]: Use #:test-flags to disable one test instead of patching test
files in 'disable-broken-tests phase; add new phases 'fix-references and
'build-extensions.
[propagated-inputs]: Remove python-matplotlib; add kentutils, python-numpy,
python-pandas, and python-psutil.
[inputs]: Add zlib.
[native-inputs]: Remove python-numpy, python-pandas, python-psutil,
python-six, and kentutils.

Change-Id: I62948b1f3169f93f752896fdf02d2887740e98cc
 2025-01-01 14:13:34 +01:00
Ricardo Wurmus
3c31650d18
gnu: python-upsetplot: Add missing inputs. 
* gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
 2025-01-01 14:11:52 +01:00
Yarl Baudig
41e192c922
gnu: pinebook-pro-image-type: augment partition offset. 
* gnu/system/images/pinebook-pro.scm: augment partition offset
to make room for the bootloader.

Change-Id: I91a3758243a13960165d40b94efe017e6e059a22
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:38:27 +01:00
Vinicius Monego
07a352738a
gnu: Add python-sphinx-inline-tabs. 
* gnu/packages/sphinx.scm (python-sphinx-inline-tabs): New variable.

Change-Id: I92516cdc404cdcaee74cb8cf19f255c049c43021
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:05 +01:00
vicvbcun
96b7e92a8f
gnu: pari-gp: Install galdata. 
* gnu/packages/algebra.scm (pari-galdata): New variable.
(pari-gp)[arguments]<#:phases>: Add phase "install-galdata".

Change-Id: Iaec77b0ab60d8ff59c8a36e7e0a7878b58742751
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: Id74aa6ce315df48a2d917baf1a436ba54b1b5185
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
2d0faf10ad
gnu: pari-gp: Use G-Expressions. 
* gnu/packages/algebra.scm (pari-gp)[arguments]: Use G-Expressions.  Unset
make-flags.

Change-Id: Id2be46acd67b474d6fdb8935070ffb243e87f920
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I7be07998e9e2d1fe9194d4af6a57537467f5e097
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
806d23693a
gnu: Add tachyon. 
* gnu/packages/graphics.scm (tachyon): New variable.

Change-Id: I57780c08c6b496e40459789d693b9b24fb4a9da8
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I5914afad8d293787b9898a229084e6c79fbe8911
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00
vicvbcun
3edd17ea51
gnu: Add palp. 
* gnu/packages/maths.scm (palp): New variable.

Change-Id: I37ee870858fef505999dfdc02d1955673366d718
Co-authored by: Vinicius Monego <monego@posteo.net>

Change-Id: I853cbccca5c34355d9df74a3cbbd5f818a21ebb5
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
 2025-01-01 13:05:04 +01:00