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gnu: r-biovizbase: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-biovizbase): Move from here...
* gnu/packages/bioconductor.scm (r-biovizbase): ...to here.
This commit is contained in:
zimoun 2021-05-21 22:26:03 +02:00 committed by Ricardo Wurmus
parent 8d4311bb8e
commit fea33b9d1e
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2 changed files with 42 additions and 42 deletions
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42
gnu/packages/bioconductor.scm
View file

@ -2249,6 +2249,48 @@ (define-public r-biostrings
biological sequences or sets of sequences.")
(license license:artistic2.0)))
(define-public r-biovizbase
(package
(name "r-biovizbase")
(version "1.38.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "biovizBase" version))
(sha256
(base32
"10jflvadfcgxq2jnfxkpn417xd8ibh3zllz9rsqnq5w3wgfr4fhq"))))
(properties `((upstream-name . "biovizBase")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-annotationfilter" ,r-annotationfilter)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-dichromat" ,r-dichromat)
("r-ensembldb" ,r-ensembldb)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-hmisc" ,r-hmisc)
("r-iranges" ,r-iranges)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rlang" ,r-rlang)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/biovizBase")
(synopsis "Basic graphic utilities for visualization of genomic data")
(description
"The biovizBase package is designed to provide a set of utilities, color
schemes and conventions for genomic data. It serves as the base for various
high-level packages for biological data visualization. This saves development
effort and encourages consistency.")
(license license:artistic2.0)))
(define-public r-bsgenome
(package
(name "r-bsgenome")

42
gnu/packages/bioinformatics.scm
View file

@ -9153,48 +9153,6 @@ (define-public r-ensembldb
;; No version specified
(license license:lgpl3+)))
(define-public r-biovizbase
(package
(name "r-biovizbase")
(version "1.38.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "biovizBase" version))
(sha256
(base32
"10jflvadfcgxq2jnfxkpn417xd8ibh3zllz9rsqnq5w3wgfr4fhq"))))
(properties `((upstream-name . "biovizBase")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-annotationfilter" ,r-annotationfilter)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-dichromat" ,r-dichromat)
("r-ensembldb" ,r-ensembldb)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-hmisc" ,r-hmisc)
("r-iranges" ,r-iranges)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rlang" ,r-rlang)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/biovizBase")
(synopsis "Basic graphic utilities for visualization of genomic data")
(description
"The biovizBase package is designed to provide a set of utilities, color
schemes and conventions for genomic data. It serves as the base for various
high-level packages for biological data visualization. This saves development
effort and encourages consistency.")
(license license:artistic2.0)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))