gnu: Add r-damefinder.

* gnu/packages/bioconductor.scm (r-damefinder): New variable.
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Mădălin Ionel Patrașcu 2022-10-28 04:53:53 +02:00 committed by Ricardo Wurmus
parent 812cbd9321
commit fe20121dc7
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@ -3036,6 +3036,47 @@ (define-public r-dama
factorial microarray data.")
(license license:gpl2+)))
(define-public r-damefinder
(package
(name "r-damefinder")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DAMEfinder" version))
(sha256
(base32
"123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf"))))
(properties `((upstream-name . "DAMEfinder")))
(build-system r-build-system)
(propagated-inputs
(list r-biocgenerics
r-biostrings
r-bumphunter
r-cowplot
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-ggplot2
r-iranges
r-limma
r-plyr
r-readr
r-reshape2
r-rsamtools
r-s4vectors
r-stringr
r-summarizedexperiment
r-variantannotation))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/DAMEfinder")
(synopsis "Differential allelicly methylated regions")
(description
"This package offers functionality for taking methtuple or Bismark
outputs to calculate @acronym{ASM, Allele-Specific Methylation} scores and
compute @acronym{DAMEs, Differential Allelicly MEthylated} regions. It also
offers nice visualization of methyl-circle plots.")
(license license:expat)))
(define-public r-dearseq
(package
(name "r-dearseq")