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gnu: snakemake-7: Fix version reporting.

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* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Add phase
'patch-version and use G-exp.
[build-system]: Use pyproject-build-system.
This commit is contained in:
Ricardo Wurmus 2023-08-01 08:18:36 +02:00
parent 896b40d2ca
commit f872482043
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GPG key ID: 197A5888235FACAC
1 changed files with 34 additions and 25 deletions
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17
gnu/packages/python-xyz.scm
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@ -11519,10 +11519,11 @@ (define-public snakemake-7
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 "1qrqbmx4cbis0wxr6dl2rdjv9v627sbirsz6v5c31vlbqwkvs04q")))) (base32 "1qrqbmx4cbis0wxr6dl2rdjv9v627sbirsz6v5c31vlbqwkvs04q"))))
(build-system python-build-system) (build-system pyproject-build-system)
(arguments (arguments
'(#:phases (list
(modify-phases %standard-phases #:phases
#~(modify-phases %standard-phases
;; For cluster execution Snakemake will call Python. Since there is ;; For cluster execution Snakemake will call Python. Since there is
;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We ;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We
;; fix this by calling the snakemake wrapper instead. ;; fix this by calling the snakemake wrapper instead.
@ -11532,8 +11533,16 @@ (define-public snakemake-7
(("self\\.get_python_executable\\(\\),") (("self\\.get_python_executable\\(\\),")
"") "")
(("\"-m snakemake\"") (("\"-m snakemake\"")
(string-append "\"" (assoc-ref outputs "out") (string-append "\"" #$output
"/bin/snakemake" "\""))))) "/bin/snakemake" "\"")))))
(add-after 'unpack 'patch-version
(lambda _
(substitute* "setup.py"
(("version=versioneer.get_version\\(\\)")
(format #f "version=~s" #$version)))
(substitute* '("snakemake/_version.py"
"versioneer.py")
(("0\\+unknown") #$version))))
(replace 'check (replace 'check
(lambda* (#:key tests? #:allow-other-keys) (lambda* (#:key tests? #:allow-other-keys)
(when tests? (when tests?