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gnu: snakemake-5: Use G-expression.

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* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Use #$output instead
of referencing "out" in outputs.

Change-Id: Ie3d6d5788c4db4060e26079cb81441f5bc6f08e8
This commit is contained in:
Ricardo Wurmus 2024-03-19 14:39:21 +01:00
parent 8b8e7971ba
commit f3958db4ad
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GPG key ID: 197A5888235FACAC
1 changed files with 12 additions and 13 deletions
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25
gnu/packages/python-xyz.scm
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@ -12821,19 +12821,18 @@ (define-public snakemake
(build-system python-build-system)
(arguments
;; TODO: Package missing test dependencies.
'(#:tests? #f
#:phases
(modify-phases %standard-phases
;; For cluster execution Snakemake will call Python. Since there is
;; no suitable PYTHONPATH set, cluster execution will fail. We fix
;; this by calling the snakemake wrapper instead.
(add-after 'unpack 'call-wrapper-not-wrapped-snakemake
(lambda* (#:key outputs #:allow-other-keys)
(substitute* "snakemake/executors/__init__.py"
(("\\{sys.executable\\} -m snakemake")
(string-append (assoc-ref outputs "out")
"/bin/snakemake")))
#t)))))
(list
#:tests? #f
#:phases
#~(modify-phases %standard-phases
;; For cluster execution Snakemake will call Python. Since there is
;; no suitable PYTHONPATH set, cluster execution will fail. We fix
;; this by calling the snakemake wrapper instead.
(add-after 'unpack 'call-wrapper-not-wrapped-snakemake
(lambda _
(substitute* "snakemake/executors/__init__.py"
(("\\{sys.executable\\} -m snakemake")
(string-append #$output "/bin/snakemake"))))))))
(propagated-inputs
(list python-appdirs
python-configargparse