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gnu: Add r-trajectoryutils.
* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
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@ -4157,6 +4157,36 @@ (define-public r-shortread
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ungapped alignment formats.")
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ungapped alignment formats.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-trajectoryutils
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(package
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(name "r-trajectoryutils")
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(version "1.0.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "TrajectoryUtils" version))
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(sha256
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(base32
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"1b7mg3ypp1ay98cav47h9vn692lx0n9b5b0hpansgnkr5prb823b"))))
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(properties
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`((upstream-name . "TrajectoryUtils")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-igraph" ,r-igraph)
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("r-matrix" ,r-matrix)
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("r-s4vectors" ,r-s4vectors)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/TrajectoryUtils")
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(synopsis "Single-cell trajectory analysis utilities")
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(description
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"This package implements low-level utilities for single-cell trajectory
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analysis, primarily intended for re-use inside higher-level packages. It
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includes a function to create a cluster-level minimum spanning tree and data
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structures to hold pseudotime inference results.")
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(license license:gpl3)))
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(define-public r-slingshot
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(define-public r-slingshot
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(package
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(package
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(name "r-slingshot")
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(name "r-slingshot")
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