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gnu: r-deseq: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-deseq): Move from here...
* gnu/packages/bioconductor.scm (r-deseq): ...to here.
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zimoun 2021-05-21 22:25:49 +02:00 committed by Ricardo Wurmus
parent bb118f20fe
commit ef954bb488
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2 changed files with 31 additions and 31 deletions
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31
gnu/packages/bioconductor.scm
View file

@ -2218,6 +2218,37 @@ (define-public r-category
analysis.")
(license license:artistic2.0)))
(define-public r-deseq
(package
(name "r-deseq")
(version "1.39.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DESeq" version))
(sha256
(base32
"047hph5aqmjnz1aqprziw0smdn5lf96hmwpnvqrxv1j2yfvcf3h1"))))
(properties `((upstream-name . "DESeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-lattice" ,r-lattice)
("r-locfit" ,r-locfit)
("r-mass" ,r-mass)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "https://www-huber.embl.de/users/anders/DESeq/")
(synopsis "Differential gene expression analysis")
(description
"This package provides tools for estimating variance-mean dependence in
count data from high-throughput genetic sequencing assays and for testing for
differential expression based on a model using the negative binomial
distribution.")
(license license:gpl3+)))
(define-public r-deseq2
(package
(name "r-deseq2")

31
gnu/packages/bioinformatics.scm
View file

@ -9196,37 +9196,6 @@ (define-public r-vsn
and specific in detecting differential transcription.")
(license license:artistic2.0)))
(define-public r-deseq
(package
(name "r-deseq")
(version "1.39.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DESeq" version))
(sha256
(base32
"047hph5aqmjnz1aqprziw0smdn5lf96hmwpnvqrxv1j2yfvcf3h1"))))
(properties `((upstream-name . "DESeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-lattice" ,r-lattice)
("r-locfit" ,r-locfit)
("r-mass" ,r-mass)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "https://www-huber.embl.de/users/anders/DESeq/")
(synopsis "Differential gene expression analysis")
(description
"This package provides tools for estimating variance-mean dependence in
count data from high-throughput genetic sequencing assays and for testing for
differential expression based on a model using the negative binomial
distribution.")
(license license:gpl3+)))
(define-public r-edaseq
(package
(name "r-edaseq")