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gnu: Add r-cner.
* gnu/packages/bioconductor.scm (r-cner): New variable.
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@ -8875,6 +8875,57 @@ (define-public r-beachmat
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matrices.")
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(license license:gpl3)))
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;; This package includes files that have been taken from kentutils. Some
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;; parts of kentutils are not released under a free license, but this package
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;; only uses files that are also found in the free parts of kentutils.
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(define-public r-cner
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(package
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(name "r-cner")
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(version "1.26.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "CNEr" version))
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(sha256
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(base32 "0qy4pm23vyy23zwsjkf0mpf2c0p54nq26w9lq7j0ld4bx9l3jc6c"))))
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(properties `((upstream-name . "CNEr")))
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(build-system r-build-system)
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(inputs `(("zlib" ,zlib)))
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(propagated-inputs
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`(("r-annotate" ,r-annotate)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-dbi" ,r-dbi)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-go-db" ,r-go-db)
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("r-iranges" ,r-iranges)
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("r-keggrest" ,r-keggrest)
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("r-powerlaw" ,r-powerlaw)
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("r-r-utils" ,r-r-utils)
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("r-readr" ,r-readr)
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("r-reshape2" ,r-reshape2)
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("r-rsqlite" ,r-rsqlite)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/ge11232002/CNEr")
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(synopsis "CNE Detection and Visualization")
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(description
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"This package provides tools for large-scale identification and
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advanced visualization of sets of conserved noncoding elements.")
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;; For all files in src/ucsc "license is hereby granted for all use -
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;; public, private or commercial"; this includes those files that don't
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;; have a license header, because they are included in the free parts of
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;; the kentutils package.
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(license (list license:gpl2
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(license:non-copyleft
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"https://raw.githubusercontent.com/ucscGenomeBrowser/kent/v410_base/src/lib/LICENSE")))))
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(define-public r-singlecellexperiment
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(package
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(name "r-singlecellexperiment")
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