gnu: Add r-animalcules.

* gnu/packages/bioconductor.scm (r-animalcules): New variable.
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Mădălin Ionel Patrașcu 2022-12-07 06:18:37 +01:00 committed by Ricardo Wurmus
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commit e0746ee4c4
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@ -2384,6 +2384,65 @@ (define-public r-ancombc
these biases and construct statistically consistent estimators.")
(license license:artistic2.0)))
(define-public r-animalcules
(package
(name "r-animalcules")
(version "1.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "animalcules" version))
(sha256
(base32
"1alpsamrglgvzhcibkaf7m3gyiv61wbj1gvsq4lw6vjka100j9qr"))))
(properties `((upstream-name . "animalcules")))
(build-system r-build-system)
(propagated-inputs
(list r-ape
r-assertthat
r-biomformat
r-caret
r-covr
r-deseq2
r-dplyr
r-dt
r-forcats
r-ggplot2
r-glmnet
r-gunifrac
r-lattice
r-limma
r-magrittr
r-matrix
r-multiassayexperiment
r-plotly
r-plotroc
r-rentrez
r-reshape2
r-s4vectors
r-scales
r-shiny
r-shinyjs
r-summarizedexperiment
r-tibble
r-tsne
r-umap
r-vegan
r-xml))
(native-inputs (list r-knitr))
(home-page "https://github.com/compbiomed/animalcules")
(synopsis "Interactive microbiome analysis toolkit")
(description
"Animalcules is an R package for utilizing up-to-date data analytics,
visualization methods, and machine learning models to provide users an
easy-to-use interactive microbiome analysis framework. It can be used as a
standalone software package or users can explore their data with the
accompanying interactive R Shiny application. Traditional microbiome analysis
such as alpha/beta diversity and differential abundance analysis are enhanced,
while new methods like biomarker identification are introduced by animalcules.
Powerful interactive and dynamic figures generated by animalcules enable users
to understand their data better and discover new insights.")
(license license:artistic2.0)))
(define-public r-aldex2
(package
(name "r-aldex2")