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gnu: Add r-animalcules.
* gnu/packages/bioconductor.scm (r-animalcules): New variable.
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@ -2384,6 +2384,65 @@ (define-public r-ancombc
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these biases and construct statistically consistent estimators.")
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(license license:artistic2.0)))
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(define-public r-animalcules
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(package
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(name "r-animalcules")
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(version "1.14.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "animalcules" version))
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(sha256
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(base32
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"1alpsamrglgvzhcibkaf7m3gyiv61wbj1gvsq4lw6vjka100j9qr"))))
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(properties `((upstream-name . "animalcules")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-ape
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r-assertthat
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r-biomformat
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r-caret
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r-covr
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r-deseq2
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r-dplyr
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r-dt
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r-forcats
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r-ggplot2
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r-glmnet
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r-gunifrac
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r-lattice
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r-limma
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r-magrittr
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r-matrix
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r-multiassayexperiment
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r-plotly
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r-plotroc
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r-rentrez
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r-reshape2
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r-s4vectors
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r-scales
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r-shiny
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r-shinyjs
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r-summarizedexperiment
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r-tibble
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r-tsne
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r-umap
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r-vegan
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r-xml))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/compbiomed/animalcules")
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(synopsis "Interactive microbiome analysis toolkit")
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(description
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"Animalcules is an R package for utilizing up-to-date data analytics,
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visualization methods, and machine learning models to provide users an
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easy-to-use interactive microbiome analysis framework. It can be used as a
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standalone software package or users can explore their data with the
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accompanying interactive R Shiny application. Traditional microbiome analysis
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such as alpha/beta diversity and differential abundance analysis are enhanced,
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while new methods like biomarker identification are introduced by animalcules.
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Powerful interactive and dynamic figures generated by animalcules enable users
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to understand their data better and discover new insights.")
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(license license:artistic2.0)))
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(define-public r-aldex2
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(package
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(name "r-aldex2")
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