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gnu: python-hicmatrix: Update to 15.
* gnu/packages/bioinformatics.scm (python-hicmatrix): Update to 15. [arguments]: Enabled tests. Remove 'relax-requirements phase. [native-inputs]: Add python-pytest. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -11822,29 +11822,26 @@ (define-public python-cooler
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(define-public python-hicmatrix
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(package
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(name "python-hicmatrix")
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(version "12")
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(source
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(origin
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;; Version 12 is not available on pypi.
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/deeptools/HiCMatrix")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1xhdyx16f3brgxgxybixdi64ki8nbbkq5vk4h9ahi11pzpjfn1pj"))))
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(version "15")
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(source
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(origin
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;;Pypi sources do not contain any test
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/deeptools/HiCMatrix")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1dshjxgb16sdfg9k1bhw2yhyngac04k4ca7aqy8g3i3pprr068r5"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'relax-requirements
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(lambda _
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(substitute* '("requirements.txt"
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"setup.py")
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(("cooler *=+ *0.8.5")
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"cooler==0.8.*"))
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#t)))))
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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(invoke "python" "-m" "pytest" "-v")))))))
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(propagated-inputs
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`(("python-cooler" ,python-cooler)
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("python-intervaltree" ,python-intervaltree)
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@ -11852,6 +11849,8 @@ (define-public python-hicmatrix
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("python-pandas" ,python-pandas)
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("python-scipy" ,python-scipy)
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("python-tables" ,python-tables)))
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(native-inputs
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`(("python-pytest" ,python-pytest)))
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(home-page "https://github.com/deeptools/HiCMatrix/")
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(synopsis "HiCMatrix class for HiCExplorer and pyGenomeTracks")
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(description
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