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gnu: r-genomationdata: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here... * gnu/packages/bioconductor.scm (r-genomationdata): ...to here. [source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
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2 changed files with 26 additions and 28 deletions
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@ -1170,6 +1170,32 @@ (define-public r-geneoverlap
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and visualize the results.")
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(license license:gpl3)))
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(define-public r-genomationdata
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(package
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(name "r-genomationdata")
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(version "1.22.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "genomationData" version 'experiment))
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(sha256
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(base32
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"0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g"))))
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(properties
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`((upstream-name . "genomationData")))
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(build-system r-build-system)
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;; As this package provides little more than large data files, it doesn't
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;; make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
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(synopsis "Experimental data for use with the genomation package")
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(description
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"This package contains experimental genetic data for use with the
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genomation package. Included are Chip Seq, Methylation and Cage data,
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downloaded from Encode.")
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(license license:gpl3+)))
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(define-public r-pasilla
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(package
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(name "r-pasilla")
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@ -8023,34 +8023,6 @@ (define-public r-phantompeakqualtools
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characteristic tag shift values in these assays.")
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(license license:bsd-3)))
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(define-public r-genomationdata
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(package
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(name "r-genomationdata")
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(version "1.22.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://bioconductor.org/packages/"
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"release/data/experiment/src/contrib/"
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"genomationData_" version ".tar.gz"))
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(sha256
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(base32
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"0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g"))))
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(build-system r-build-system)
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;; As this package provides little more than large data files, it doesn't
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;; make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
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(synopsis "Experimental data for use with the genomation package")
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(description
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"This package contains experimental genetic data for use with the
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genomation package. Included are Chip Seq, Methylation and Cage data,
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downloaded from Encode.")
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(license license:gpl3+)))
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(define-public r-seqlogo
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(package
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(name "r-seqlogo")
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