gnu: r-genomationdata: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomationdata): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
This commit is contained in:
zimoun 2021-05-21 22:25:45 +02:00 committed by Ricardo Wurmus
parent f8fe5497c7
commit d7fa9c1ffd
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GPG key ID: 197A5888235FACAC
2 changed files with 26 additions and 28 deletions

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@ -1170,6 +1170,32 @@ (define-public r-geneoverlap
and visualize the results.")
(license license:gpl3)))
(define-public r-genomationdata
(package
(name "r-genomationdata")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "genomationData" version 'experiment))
(sha256
(base32
"0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g"))))
(properties
`((upstream-name . "genomationData")))
(build-system r-build-system)
;; As this package provides little more than large data files, it doesn't
;; make sense to build substitutes.
(arguments `(#:substitutable? #f))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Experimental data for use with the genomation package")
(description
"This package contains experimental genetic data for use with the
genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-pasilla
(package
(name "r-pasilla")

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@ -8023,34 +8023,6 @@ (define-public r-phantompeakqualtools
characteristic tag shift values in these assays.")
(license license:bsd-3)))
(define-public r-genomationdata
(package
(name "r-genomationdata")
(version "1.22.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/"
"release/data/experiment/src/contrib/"
"genomationData_" version ".tar.gz"))
(sha256
(base32
"0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g"))))
(build-system r-build-system)
;; As this package provides little more than large data files, it doesn't
;; make sense to build substitutes.
(arguments `(#:substitutable? #f))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Experimental data for use with the genomation package")
(description
"This package contains experimental genetic data for use with the
genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-seqlogo
(package
(name "r-seqlogo")