From cec92c060ec58e6e8981a0a042371a771d6ab91b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 29 Nov 2024 09:38:16 +0100
Subject: [PATCH] gnu: r-cytoml: Add missing inputs.

* gnu/packages/bioconductor.scm (r-cytoml)[native-inputs]: Add
r-devtools, r-flowclust, r-flowstats, and r-flowworkspacedata.
[properties]: Tell updater to keep extra inputs and ignore others.

Change-Id: I64cfc0b2b424f537b086a7f2f91e1ef15631c461
---
 gnu/packages/bioconductor.scm | 12 ++++++++++--
 1 file changed, 10 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 48ac5ed1ac..ee83f021b3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -20640,7 +20640,10 @@ (define-public r-cytoml
        (sha256
         (base32
          "039rs6l92gjgvgh1nb8hfdg7h6dvak9hb5pjinli8x09iw08c463"))))
-    (properties `((upstream-name . "CytoML")))
+    (properties
+     `((upstream-name . "CytoML")
+       (updater-extra-native-inputs . ("r-flowworkspacedata"))
+       (updater-ignored-native-inputs . ("r-old" "r-table"))))
     (build-system r-build-system)
     (inputs
      (list libxml2))
@@ -20665,7 +20668,12 @@ (define-public r-cytoml
            r-xml
            r-yaml))
     (native-inputs
-     (list r-knitr r-testthat))
+     (list r-devtools
+           r-flowclust
+           r-flowstats
+           r-flowworkspacedata
+           r-knitr
+           r-testthat))
     (home-page "https://github.com/RGLab/CytoML")
     (synopsis "GatingML interface for cross platform cytometry data sharing")
     (description