From c851b73e79b9a1927658714f191b4611b8ab1ea3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 27 Nov 2024 13:35:22 +0100
Subject: [PATCH] gnu: r-msexperiment: Add missing inputs.

* gnu/packages/bioconductor.scm (r-msexperiment)[native-inputs]: Add
r-msbackendsql, r-msdata, r-mzr, and r-rsqlite.
[properties]: Tell updater to keep r-mzr.

Change-Id: I7fda0e9fd6b369506686970926f0ab53364a6503
---
 gnu/packages/bioconductor.scm | 14 ++++++++++++--
 1 file changed, 12 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1686ecb95e..a88e6dcf14 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2731,7 +2731,9 @@ (define-public r-msexperiment
        (uri (bioconductor-uri "MsExperiment" version))
        (sha256
         (base32 "15vxwvgimliyzj0rb06s7rpm3wrz3gc1n0wdgs0jd4flwp152g9h"))))
-    (properties `((upstream-name . "MsExperiment")))
+    (properties
+     `((upstream-name . "MsExperiment")
+       (updater-extra-native-inputs . ("r-mzr"))))
     (build-system r-build-system)
     (propagated-inputs (list r-biocgenerics
                              r-dbi
@@ -2741,7 +2743,15 @@ (define-public r-msexperiment
                              r-s4vectors
                              r-spectra
                              r-summarizedexperiment))
-    (native-inputs (list r-knitr r-testthat))
+    (native-inputs (list r-knitr
+                         r-msbackendsql
+                         r-msdata
+                         r-mzr
+                         r-rsqlite
+                         r-s4vectors
+                         r-spectra
+                         r-summarizedexperiment
+                         r-testthat))
     (home-page "https://github.com/RforMassSpectrometry/MsExperiment")
     (synopsis "Infrastructure for Mass Spectrometry experiments")
     (description