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gnu: r-motifrg: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-motifrg): Move from here...
* gnu/packages/bioconductor.scm (r-motifrg): ...to here.
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zimoun 2021-05-21 22:26:08 +02:00 committed by Ricardo Wurmus
parent 621aa3b442
commit c2a18aee16
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2 changed files with 27 additions and 27 deletions
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27
gnu/packages/bioconductor.scm
View file

@ -3129,6 +3129,33 @@ (define-public r-limma
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
(define-public r-motifrg
(package
(name "r-motifrg")
(version "1.31.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "motifRG" version))
(sha256
(base32
"1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
(properties `((upstream-name . "motifRG")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-iranges" ,r-iranges)
("r-seqlogo" ,r-seqlogo)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/motifRG")
(synopsis "Discover motifs in high throughput sequencing data")
(description
"This package provides tools for discriminative motif discovery in high
throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0)))
(define-public r-msnbase
(package
(name "r-msnbase")

27
gnu/packages/bioinformatics.scm
View file

@ -8046,33 +8046,6 @@ (define-public r-seqlogo
Stephens (1990).")
(license license:lgpl2.0+)))
(define-public r-motifrg
(package
(name "r-motifrg")
(version "1.31.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "motifRG" version))
(sha256
(base32
"1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
(properties `((upstream-name . "motifRG")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-iranges" ,r-iranges)
("r-seqlogo" ,r-seqlogo)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/motifRG")
(synopsis "Discover motifs in high throughput sequencing data")
(description
"This package provides tools for discriminative motif discovery in high
throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0)))
(define-public r-zlibbioc
(package
(name "r-zlibbioc")