mirror of
https://git.savannah.gnu.org/git/guix.git
synced 2025-01-31 14:56:54 +01:00
gnu: Add r-hdwgcna.
* gnu/packages/bioinformatics.scm (r-hdwgcna): New variable. Change-Id: I1e3c7663a777ee543c53ccee90b6e71f544d89aa
This commit is contained in:
Ricardo Wurmus
parent
ea7510a32f
commit
c0260cafe5
1 changed files with 192 additions and 0 deletions
|
|
@ -1062,6 +1062,198 @@ (define-public r-ewastools
|
|||
with DNA methylation micro-array data.")
|
||||
(license license:unlicense))))
|
||||
|
||||
(define-public r-hdwgcna
|
||||
(let ((commit "950b8c74c5d74b30b4a562820e70ca00ee29e2c6")
|
||||
(revision "1"))
|
||||
(package
|
||||
(name "r-hdwgcna")
|
||||
(version (git-version "0.4.00" revision commit))
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/smorabit/hdWGCNA")
|
||||
(commit commit)))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "0d9hr2ly7k6kq6yp5spjlp6lp9yx593xmggajyzjxlhxi2lbyqgn"))
|
||||
(snippet
|
||||
'(for-each delete-file
|
||||
(list
|
||||
"docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js"
|
||||
"docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js"
|
||||
"docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"
|
||||
"docs/deps/clipboard.js-2.0.11/clipboard.min.js"
|
||||
"docs/deps/headroom-0.11.0/headroom.min.js"
|
||||
"docs/deps/headroom-0.11.0/jQuery.headroom.min.js"
|
||||
"docs/deps/jquery-3.6.0/jquery-3.6.0.min.js"
|
||||
"docs/deps/search-1.0.0/autocomplete.jquery.min.js"
|
||||
"docs/deps/search-1.0.0/fuse.min.js"
|
||||
"docs/deps/search-1.0.0/mark.min.js")))))
|
||||
(properties `((upstream-name . "hdWGCNA")))
|
||||
(build-system r-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:modules
|
||||
'((guix build r-build-system)
|
||||
(guix build minify-build-system)
|
||||
(guix build utils)
|
||||
(ice-9 match))
|
||||
#:imported-modules
|
||||
`(,@%r-build-system-modules (guix build minify-build-system))
|
||||
#:phases
|
||||
'(modify-phases %standard-phases
|
||||
(add-after 'unpack 'process-javascript
|
||||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
(with-directory-excursion "docs/deps/"
|
||||
(for-each (match-lambda
|
||||
((source . target)
|
||||
(minify source #:target target)))
|
||||
`((,(string-append (assoc-ref inputs "js-bootstrap-5.1")
|
||||
"/dist/js/bootstrap.bundle.js")
|
||||
. "bootstrap-5.1.0/bootstrap.bundle.min.js")
|
||||
(,(string-append (assoc-ref inputs "js-bootstrap-5.3")
|
||||
"/dist/js/bootstrap.bundle.js")
|
||||
. "bootstrap-5.3.1/bootstrap.bundle.min.js")
|
||||
(,(search-input-file inputs "/dist/bootstrap-toc.js")
|
||||
. "bootstrap-toc-1.0.1/bootstrap-toc.min.js")
|
||||
(,(search-input-file inputs "/dist/clipboard.js")
|
||||
. "clipboard.js-2.0.11/clipboard.min.js")
|
||||
("jquery-3.6.0/jquery-3.6.0.js"
|
||||
. "jquery-3.6.0/jquery-3.6.0.min.js")
|
||||
(,(search-input-file inputs "/dist/autocomplete.jquery.js")
|
||||
. "search-1.0.0/autocomplete.jquery.min.js")
|
||||
(,(search-input-file inputs "/dist/fuse.js")
|
||||
. "search-1.0.0/fuse.min.js")
|
||||
(,(search-input-file inputs "/dist/mark.js")
|
||||
. "search-1.0.0/mark.min.js")
|
||||
(,(assoc-ref inputs "js-headroom")
|
||||
. "headroom-0.11.0/headroom.min.js")
|
||||
(,(assoc-ref inputs "js-headroom-jquery")
|
||||
. "docs/deps/headroom-0.11.0/jQuery.headroom.min.js")))))))))
|
||||
(propagated-inputs (list r-dplyr
|
||||
r-enrichr
|
||||
r-geneoverlap
|
||||
r-genomicranges
|
||||
r-ggplot2
|
||||
r-ggraph
|
||||
r-ggrepel
|
||||
r-harmony
|
||||
r-igraph
|
||||
r-matrix
|
||||
r-proxy
|
||||
r-seurat
|
||||
r-tester
|
||||
r-tidygraph
|
||||
r-ucell
|
||||
r-wgcna))
|
||||
(native-inputs
|
||||
`(("esbuild" ,esbuild)
|
||||
("js-autocomplete"
|
||||
,(let ((version "0.38.0"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/algolia/autocomplete")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name "js-autocomplete" version))
|
||||
(sha256
|
||||
(base32
|
||||
"04r1qmd5cxcf8cf471kx51y6wq86rh54y42y7xl51z95ag5csswl")))))
|
||||
("js-bootstrap-5.1"
|
||||
,(let ((version "5.1.0"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/twbs/bootstrap")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name "js-bootstrap" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0wjyi497wy2lbypkxwa72z294zbh827lb2s8pzgi40hvjsw00ns4")))))
|
||||
("js-bootstrap-5.3"
|
||||
,(let ((version "5.3.1"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/twbs/bootstrap")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name "js-bootstrap" version))
|
||||
(sha256
|
||||
(base32
|
||||
"045majqayd4wrpq3r3fisi56grwizykwj5705jlzsg7bwln8v3qr")))))
|
||||
("js-bootstrap-toc"
|
||||
,(let ((version "1.0.1"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/afeld/bootstrap-toc")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name "js-bootstrap-toc" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1d4rqvbkwmmld0d8nz2is1rwc55rlb4b0v2anylxj63335cs0mk0")))))
|
||||
("js-clipboard"
|
||||
,(let ((version "2.0.11"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/zenorocha/clipboard.js")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name "js-clipboard" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0nn9cry7ddf47vkl3vnpc4z86da46wq7m3qf3awcs05197bjn1vj")))))
|
||||
("js-fuse"
|
||||
,(let ((version "6.4.6"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/krisk/Fuse")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name "js-fuse" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1k0l2vxw4nsmwrz48kmgv41ymphrdwbdbckiv9w011jwbnfsqvn5")))))
|
||||
("js-mark"
|
||||
,(let ((version "8.11.1"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/julkue/mark.js")
|
||||
(commit version)))
|
||||
(file-name (git-file-name "js-mark" version))
|
||||
(sha256
|
||||
(base32
|
||||
"108cw4732wjlwwjwpc86fqlr8yfrlagqdn7126qxa70c0ldfma93")))))
|
||||
("js-headroom"
|
||||
,(let ((version "0.11.0"))
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append "https://unpkg.com/headroom.js@"
|
||||
version "/dist/headroom.js"))
|
||||
(file-name (string-append "js-headroom-" version ".js"))
|
||||
(sha256
|
||||
(base32
|
||||
"0d76fpajxzwsj4847zgrv05daq8ri8hcww5dcldq1q2iyyxsmrva")))))
|
||||
("js-headroom-jquery"
|
||||
,(let ((version "0.11.0"))
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append "https://unpkg.com/headroom.js@"
|
||||
version "/dist/jQuery.headroom.js"))
|
||||
(file-name (string-append "js-headroom-jquery-" version ".js"))
|
||||
(sha256
|
||||
(base32
|
||||
"1jz1ampd9k8p32m6bid4yrr66bkngd8blj2q0774hl91rszhjqrv")))))))
|
||||
(home-page "https://github.com/smorabit/hdWGCNA")
|
||||
(synopsis "Weighted gene co-expression network analysis")
|
||||
(description
|
||||
"@code{hdWGCNA} is an R package for performing weighted gene
|
||||
co-expression network analysis in high dimensional -omics such as single-cell
|
||||
RNA-seq or spatial transcriptomics.")
|
||||
(license license:gpl3))))
|
||||
|
||||
(define-public r-netid
|
||||
(let ((commit "6ad1ffdd64a6584cc1d392524dad8e248d4590a8")
|
||||
(revision "1"))
|
||||
|
|
|
|||
Loading…
Reference in a new issue