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gnu: r-tximport: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-tximport): Move from here... * gnu/packages/bioconductor.scm (r-tximport): ...to here.
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2 changed files with 24 additions and 24 deletions
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@ -4114,6 +4114,30 @@ (define-public r-topgo
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;; Any version of the LGPL applies.
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;; Any version of the LGPL applies.
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(license license:lgpl2.1+)))
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(license license:lgpl2.1+)))
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(define-public r-tximport
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(package
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(name "r-tximport")
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(version "1.18.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "tximport" version))
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(sha256
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(base32
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"1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34"))))
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(build-system r-build-system)
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/tximport")
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(synopsis "Import and summarize transcript-level estimates for gene-level analysis")
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(description
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"This package provides tools to import transcript-level abundance,
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estimated counts and transcript lengths, and to summarize them into matrices
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for use with downstream gene-level analysis packages. Average transcript
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length, weighted by sample-specific transcript abundance estimates, is
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provided as a matrix which can be used as an offset for different expression
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of gene-level counts.")
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(license license:gpl2+)))
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(define-public r-variantannotation
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(define-public r-variantannotation
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(package
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(package
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(name "r-variantannotation")
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(name "r-variantannotation")
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@ -8164,30 +8164,6 @@ (define-public r-seqgl
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factors bound at the specific regions.")
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factors bound at the specific regions.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-tximport
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(package
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(name "r-tximport")
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(version "1.18.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "tximport" version))
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(sha256
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(base32
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"1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34"))))
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(build-system r-build-system)
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/tximport")
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(synopsis "Import and summarize transcript-level estimates for gene-level analysis")
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(description
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"This package provides tools to import transcript-level abundance,
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estimated counts and transcript lengths, and to summarize them into matrices
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for use with downstream gene-level analysis packages. Average transcript
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length, weighted by sample-specific transcript abundance estimates, is
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provided as a matrix which can be used as an offset for different expression
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of gene-level counts.")
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(license license:gpl2+)))
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(define-public r-rhdf5filters
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(define-public r-rhdf5filters
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(package
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(package
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(name "r-rhdf5filters")
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(name "r-rhdf5filters")
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