gnu: Add r-pando.

* gnu/packages/bioinformatics.scm (r-pando): New variable.
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Mădălin Ionel Patrașcu 2022-11-09 04:13:31 +01:00 committed by Ricardo Wurmus
parent 5e0aa62308
commit b4e3e02fd1
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@ -7600,6 +7600,55 @@ (define-public r-chromunity
Pore-C concatemers.")
(license license:gpl3))))
(define-public r-pando
(package
(name "r-pando")
(version "1.0.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/quadbiolab/Pando")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0c83anzdrbvg47p9xns2bxpjlx5z328can3jmzilw6rygwp7hyii"))))
(properties `((upstream-name . "Pando")))
(build-system r-build-system)
(propagated-inputs
(list r-bayestestr
r-brms
r-foreach
r-genomicranges
r-ggplot2
r-ggpointdensity
r-ggraph
r-glmnetutils
r-iranges
r-irlba
r-matrix
r-motifmatchr
r-pals
r-patchwork
r-seurat
r-signac
r-sparsematrixstats
r-tfbstools
r-tidygraph
r-tidyverse
r-uwot
r-xgboost))
(native-inputs (list r-knitr))
(home-page "https://github.com/quadbiolab/Pando")
(synopsis "Infer regulomes from multi-modal single-cell genomics data")
(description
"Pando leverages multi-modal single-cell measurements to infer gene
regulatory networks using a flexible linear model-based framework. By
modeling the relationship between TF-binding site pairs with the expression of
target genes, Pando simultaneously infers gene modules and sets of regulatory
regions for each transcription factor.")
(license license:expat)))
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))