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gnu: Add r-pando.
* gnu/packages/bioinformatics.scm (r-pando): New variable.
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@ -7600,6 +7600,55 @@ (define-public r-chromunity
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Pore-C concatemers.")
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(license license:gpl3))))
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(define-public r-pando
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(package
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(name "r-pando")
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(version "1.0.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/quadbiolab/Pando")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0c83anzdrbvg47p9xns2bxpjlx5z328can3jmzilw6rygwp7hyii"))))
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(properties `((upstream-name . "Pando")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-bayestestr
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r-brms
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r-foreach
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r-genomicranges
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r-ggplot2
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r-ggpointdensity
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r-ggraph
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r-glmnetutils
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r-iranges
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r-irlba
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r-matrix
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r-motifmatchr
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r-pals
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r-patchwork
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r-seurat
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r-signac
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r-sparsematrixstats
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r-tfbstools
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r-tidygraph
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r-tidyverse
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r-uwot
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r-xgboost))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/quadbiolab/Pando")
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(synopsis "Infer regulomes from multi-modal single-cell genomics data")
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(description
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"Pando leverages multi-modal single-cell measurements to infer gene
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regulatory networks using a flexible linear model-based framework. By
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modeling the relationship between TF-binding site pairs with the expression of
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target genes, Pando simultaneously infers gene modules and sets of regulatory
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regions for each transcription factor.")
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(license license:expat)))
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(define-public r-presto
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(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
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(revision "0"))
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