gnu: Add r-aseb.

* gnu/packages/bioconductor.scm (r-aseb): New variable.
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Mădălin Ionel Patrașcu 2022-06-22 15:57:41 +02:00 committed by Ricardo Wurmus
parent 695d7720ef
commit aef2425666
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@ -2317,6 +2317,33 @@ (define-public r-antiprofiles
tumor samples from healthy controls.")
(license license:artistic2.0)))
(define-public r-aseb
(package
(name "r-aseb")
(version "1.40.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ASEB" version))
(sha256
(base32
"1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"))))
(properties `((upstream-name . "ASEB")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/ASEB")
(synopsis "Predict acetylated lysine sites")
(description
"ASEB is an R package to predict lysine sites that can be acetylated by a
specific @dfn{KAT} (K-acetyl-transferases) family. Lysine acetylation is a
well-studied posttranslational modification on kinds of proteins. About four
thousand lysine acetylation sites and over 20 lysine KATs have been
identified. However, which KAT is responsible for a given protein or lysine
site acetylation is mostly unknown. In this package, we use a
@dfn{GSEA}-like (Gene Set Enrichment Analysis) method to make predictions.
GSEA method was developed and successfully used to detect coordinated
expression changes and find the putative functions of the long non-coding
RNAs.")
(license license:gpl3+)))
(define-public r-asgsca
(package
(name "r-asgsca")