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gnu: Add r-biomformat.

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* gnu/packages/bioconductor.scm (r-biomformat): New variable.
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Ricardo Wurmus 2021-09-07 12:16:47 +02:00
parent 48e300bd3f
commit aed1504837
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gnu/packages/bioconductor.scm
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@ -14118,6 +14118,38 @@ (define-public r-biodb
separate published packages.")
(license license:agpl3+)))
(define-public r-biomformat
(package
(name "r-biomformat")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "biomformat" version))
(sha256
(base32
"1wgshkddxbmpsihpkm0dp7vqp59ns6iqbx574y80n2pxb8dx8sy9"))))
(properties `((upstream-name . "biomformat")))
(build-system r-build-system)
(propagated-inputs
`(("r-jsonlite" ,r-jsonlite)
("r-matrix" ,r-matrix)
("r-plyr" ,r-plyr)
("r-rhdf5" ,r-rhdf5)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/joey711/biomformat/")
(synopsis "Interface package for the BIOM file format")
(description
"This is an R package for interfacing with the BIOM format. This package
includes basic tools for reading biom-format files, accessing and subsetting
data tables from a biom object (which is more complex than a single table), as
well as limited support for writing a biom-object back to a biom-format file.
The design of this API is intended to match the Python API and other tools
included with the biom-format project, but with a decidedly \"R flavor\" that
should be familiar to R users. This includes S4 classes and methods, as well
as extensions of common core functions/methods.")
(license license:gpl2)))
(define-public r-tximeta
(package
(name "r-tximeta")