gnu: Add python-mne.

* gnu/packages/python-science.scm (python-mne): New variable.
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Vivien Kraus 2022-01-20 23:21:25 +01:00 committed by Tobias Geerinckx-Rice
parent a0c19d2d20
commit 904999e683
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@ -40,6 +40,7 @@ (define-module (gnu packages python-science)
#:use-module (gnu packages databases)
#:use-module (gnu packages gcc)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages jupyter)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
@ -51,6 +52,7 @@ (define-module (gnu packages python-science)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages simulation)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages statistics)
@ -1461,3 +1463,66 @@ (define-public python-mffpy
files are directories containing several files of mostly xml files, but also
binary files.")
(license license:asl2.0)))
(define-public python-mne
(package
(name "python-mne")
(version "0.24.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "mne" version))
(sha256
(base32
"039h0pwcvl4ywfa4ij7w6x61czd322csqr59yhzfil3a7b8gzjrq"))))
(build-system python-build-system)
(arguments
;; The test data is distributed in a separate repository without a
;; license, https://github.com/mne-tools/mne-testing-data
`(#:tests? #f))
(propagated-inputs (list python-numpy python-scipy
python-matplotlib
python-tqdm
python-pooch
python-decorator
python-h5io
python-packaging
python-pymatreader
python-pyqt
python-pyqt5-sip
python-sip
python-scikit-learn
python-nibabel
python-numba
python-h5py
python-jinja2
python-pandas
python-numexpr
jupyter
python-picard
python-statsmodels
python-joblib
python-psutil
python-dipy
vtk
python-nilearn
python-xlrd
python-imageio
python-imageio-ffmpeg
python-traitlets
python-pyvista
python-pyvistaqt
python-mffpy
python-ipywidgets
;; FIXME: add the following dependencies:
;; python-ipyvtklink requires NPM to build
;; mne-qt-browser is not included, because it
;; depends on MNE.
))
(home-page "https://mne.tools/dev/")
(synopsis "MNE-Python project for MEG and EEG data analysis")
(description
"Open-source Python package for exploring, visualizing, and
analyzing human neurophysiological data: MEG, EEG, sEEG, ECoG, NIRS, and
more.")
(license license:bsd-3)))