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gnu: r-catalyst: Update description.

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* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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Mădălin Ionel Patrașcu 2022-04-13 13:21:03 +02:00 • committed by Ricardo Wurmus
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@ -13791,20 +13791,25 @@ relevant, and the minimum expression of the most abundant condition.")
r-summarizedexperiment)) r-summarizedexperiment))
(native-inputs (native-inputs
(list r-knitr)) (list r-knitr))
(home-page (home-page "https://github.com/HelenaLC/CATALYST")
"https://github.com/HelenaLC/CATALYST")
(synopsis "Cytometry data analysis tools") (synopsis "Cytometry data analysis tools")
(description (description
"This package is Cytometry dATa anALYSis Tools (CATALYST). Mass "This package is @dfn{Cytometry dATa anALYSis Tools} (CATALYST). Mass
cytometry (CyTOF) uses heavy metal isotopes rather than fluorescent tags as cytometry like @dfn{Cytometry by time of flight} (CyTOF) uses heavy metal
reporters to label antibodies, thereby substantially decreasing spectral isotopes rather than fluorescent tags as reporters to label antibodies,
overlap and allowing for examination of over 50 parameters at the single cell thereby substantially decreasing spectral overlap and allowing for examination
level. While spectral overlap is significantly less pronounced in CyTOF than of over 50 parameters at the single cell level. While spectral overlap is
flow cytometry, spillover due to detection sensitivity, isotopic impurities, significantly less pronounced in CyTOF than flow cytometry, spillover due to
and oxide formation can impede data interpretability. We designed detection sensitivity, isotopic impurities, and oxide formation can impede
CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for data interpretability. @code{CATALYST} was designed to provide a pipeline for
preprocessing of cytometry data, including i) normalization using bead preprocessing of cytometry data, including:
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
@enumerate
@item normalization using bead standards;
@item single-cell deconvolution;
@item bead-based compensation.
@end enumerate
")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-erma (define-public r-erma